References
Lim C-S, Lee C-H, Chien Y-J, Wang J-Y, Lee L-N, Yu C-J et al (2010) Culture result of smear-positive sputum samples after 2 months of antituberculous treatment. Eur Respir J 35:218–220
Brown AC, Bryant JM, Einer-Jensen K, Holdstock J, Houniet DT, Chan JZM et al (2015) Rapid whole-genome sequencing of Mycobacterium tuberculosis isolates directly from clinical samples. J Clin Microbiol 53:2230–2237
Votintseva AA, Bradley P, Pankhurst L, del Ojo Elias C, Loose M, Nilgiriwala K et al (2017) Same-day diagnostic and surveillance data for tuberculosis via whole-genome sequencing of direct respiratory samples. J Clin Microbiol 55:1285–1298
Doughty EL, Sergeant MJ, Adetifa I, Antonio M, Pallen MJ (2014) Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer. Peer J 2:e585
Ghodbane R, Drancourt M (2013) Magnetic bead protocol for culturing Mycobacterium tuberculosis from sputum specimens. J Clin Microbiol 51:1578–1579
Loukil A, Kirtania P, Bedotto M, Drancourt M (2018) FISHing Mycobacterium tuberculosis complex by use of a rpoB DNA probe bait. J Clin Microbiol 56:e00568–e00518
Loukil A, Darriet-Giudicelli F, Eldin C, Drancourt M (2018) Pulmonary tuberculosis conversion documented by microscopic staining for detection of dynamic, dormant, and dead mycobacteria (DDD staining). J Clin Microbiol 56:e01108–e01118
Zenteno-Cuevas R, Silva-Hernandez FX, Mendoza-Damian F, Ramirez-Hernandez MD, Vazquez-Medina K, Widrobo-Garcia L et al (2013) Characterisation of pks15/1 in clinical isolates of Mycobacterium tuberculosis from Mexico. Mem Inst Oswaldo Cruz 108:718–723
Sengstake S, Bergval IL, Schuitema AR, de Beer JL, Phelan J, de Zwaan R et al (2017) Pyrazinamide resistance-conferring mutations in pncA and the transmission of multidrug resistant TB in Georgia. BMC Infect Dis 17:491
Takiff HE, Feo O (2015) Clinical value of whole-genome sequencing of Mycobacterium tuberculosis. Lancet Infect Dis 15:1077–1090
Acknowledgments
J.S benefits from a Ph.D. grant from the IHU Méditerranée Infection and A.L. benefits from a Ph.D. grant from Aix-Marseille Université. We acknowledge Ayse Akkaya for her valuable technical assistance and Magdalen Lardière for reviewing English.
Funding
This work was financially supported by the IHU Méditerranée Infection.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Saad, J., Loukil, A. & Drancourt, M. Bead-captured Mycobacterium tuberculosis for next-generation sequencing diagnosis of uncultured tuberculosis. Eur J Clin Microbiol Infect Dis 39, 205–207 (2020). https://doi.org/10.1007/s10096-019-03700-1
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10096-019-03700-1