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Questions surrounding the taxonomic validity of the species Garlic mite-borne filamentous virus (genus Allexivirus)

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Abstract

Garlic mite-borne filamentous virus is one of the oldest recognized allexivirus species but, paradoxically, one with the least well studied member viruses. In this paper, we review the history of this taxon and highlight problems in designating a holotype (exemplar isolate). Analyses are presented that suggest that GarMbFV is conspecific with Garlic virus A, and therefore the former taxon should be abolished.

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References

  1. Adams MJ, Antoniw JF, Bar-Joseph M, Brunt AA, Candresse T, Foster GD, Martelli GP, Milne RG, Fauquet CM (2004) Virology Division News: the new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149:1045–1060

    CAS  PubMed  Google Scholar 

  2. Cafrune EE, Balzarini M, Conci VC (2006) Changes in the concentration of an allexivirus during the crop cycle of two garlic cultivars. Plant Disease 90:1293–1296

    Article  PubMed  Google Scholar 

  3. Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540–552

    Article  CAS  PubMed  Google Scholar 

  4. Chen J, Chen J, Adams MJ (2001) Molecular characterisation of a complex mixture of viruses in garlic with mosaic symptoms in China. Arch Virol 146:1841–1853

    Article  CAS  PubMed  Google Scholar 

  5. Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (2005) Virus taxonomy: classification and nomenclature of viruses. Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego

    Google Scholar 

  6. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321

    Article  CAS  PubMed  Google Scholar 

  7. Jombart T (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24:1403–1405

    Article  CAS  PubMed  Google Scholar 

  8. King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy: classification and nomenclature of viruses. Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego

    Google Scholar 

  9. Melo Filho PdA, Nagata T, Dusi AN, Buso JA, Torres AC, Eiras M, Resende RdO (2004) Detection of three Allexivirus species infecting garlic in Brazil. Pesquisa Agropecuária Brasileira 39:735–740

    Article  Google Scholar 

  10. Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 32:268–274

    Article  CAS  PubMed  Google Scholar 

  11. R Core Team (2014) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna

    Google Scholar 

  12. Regenmortel MHVV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (2000) Virus taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego

    Google Scholar 

  13. Sumi S, Matsumi T, Tsuneyoshi T (1999) Complete nucleotide sequences of garlic viruses A and C, members of the newly ratified genus Allexivirus. Arch Virol 144:1819–1826

    Article  CAS  PubMed  Google Scholar 

  14. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729

    Article  PubMed Central  CAS  PubMed  Google Scholar 

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Correspondence to Andrew D. W. Geering.

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The authors declare that they have no conflict of interest.

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The taxonomic change suggested here (1) has not been endorsed by the ICTV Executive Committee, (2) may differ from any new taxonomy that is ultimately approved by the ICTV, and (3) is presented for discussion only but has no official standing.

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Handling Editor: Sead Sabanadzovic.

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Geering, A.D.W., McTaggart, A.R. Questions surrounding the taxonomic validity of the species Garlic mite-borne filamentous virus (genus Allexivirus). Arch Virol 164, 2367–2370 (2019). https://doi.org/10.1007/s00705-019-04333-7

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  • DOI: https://doi.org/10.1007/s00705-019-04333-7

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