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Complete genome sequence of a tentative new umbravirus isolated from Patrinia scabiosaefolia

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Abstract

The complete genomic RNA sequence of a tentative new umbravirus from Patrinia scabiosaefolia, tentatively named “patrinia mild mottle virus” (PatMMoV), was determined. The genome of PatMMoV consists of 4,214 nucleotides and has a typical umbravirus genome organization with four open reading frames. BLAST searches showed that the complete nucleotide sequence of PatMMoV had the highest identity (72%; 50% query coverage) to Ixeridium yellow mottle-associated virus 2 (IxYMaV-2; an unclassified umbravirus). In addition, phylogenetic analysis and pairwise comparisons showed that PatMMoV and IxYMaV-2 were the most closely related and placed in the same clade within a group of umbraviruses. These results suggest that PatMMoV is a putative new member of the genus Umbravirus in the family Tombusviridae.

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Data availability

The dataset generated during the current study is available in the GenBank database (accession no. MH922775).

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Acknowledgements

This work was supported by the KRIBB Research Initiative Program, funded by the Ministry of Science and ICT, Republic of Korea.

Funding

This study was funded by KRIBB (Ministry of Science and ICT), Republic of Korea.

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Authors and Affiliations

  1. Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea

    Seungmo Lim & Jae Sun Moon

  2. School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, Republic of Korea

    Su-Heon Lee

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  1. Seungmo Lim
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Correspondence to Su-Heon Lee or Jae Sun Moon.

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Lim, S., Lee, SH. & Moon, J.S. Complete genome sequence of a tentative new umbravirus isolated from Patrinia scabiosaefolia. Arch Virol 164, 2375–2378 (2019). https://doi.org/10.1007/s00705-019-04312-y

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  • DOI: https://doi.org/10.1007/s00705-019-04312-y

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