Skip to main content
Log in

Enzymatic Characteristics of a Polyphosphate/ATP-NAD Kinase, PanK, from Myxococcus xanthus

  • Published:
Current Microbiology Aims and scope Submit manuscript

Abstract

NAD kinase is a crucial enzyme for production of NADP+. Myxococcus xanthus is a gram-negative soil bacterium that forms fruiting bodies and spores under starvation, and it accumulates polyphosphate (poly(P)) during early development. We found that M. xanthus NAD kinase (PanK) utilized both ATP and poly(P) as phosphoryl donors; therefore, PanK was designated as a poly(P)/ATP-NAD kinase. Unlike other poly(P)/ATP-NAD kinases, PanK hardly exhibited NADH kinase activity. The NAD kinase activity of PanK was inhibited by NADPH, but not NADH. Replacement of Thr-90 in the GGDGT motif of PanK with Asn decreased both ATP- and poly(P)-dependent NAD kinase activities; however, poly(P)-dependent NAD kinase activity was further decreased by approximately 6- to 10-fold compared with ATP-dependent NAD kinase activity, suggesting that Thr-90 in the GGDGT motif of PanK may be important for poly(P) utilization. PanK preferred ATP and short-chain poly(P) as phosphoryl donors. The Km of PanK for ATP, poly(P)4, and poly(P)10–15 was 0.66 mM, 0.08 mM, and 0.71 mM, respectively, and the catalytic efficiency (kcat/Km) for poly(P)4 was 2.4-fold higher than that for ATP, suggesting that M. xanthus under starvation conditions may be able to efficiently generate NADP+ using PanK, ATP, and poly(P).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  1. Kawai S, Mori S, Mukai T, Hashimoto W, Murata K (2001) Molecular characterization of Escherichia coli NAD kinase. Eur J Biochem 268:4359–4365

    Article  CAS  Google Scholar 

  2. Kawai S, Mori S, Mukai T, Suzuki S, Yamada T, Hashimoto W, Murata K (2000) Inorganic polyphosphate/ATP-NAD kinase of Micrococcus flavus and Mycobacterium tuberculosis H37Rv. Biochem Biophys Res Commun 276:57–63

    Article  CAS  Google Scholar 

  3. Kornberg A (1995) Inorganic polyphosphate: toward making a forgotten polymer unforgettable. J Bacteriol 177:491–496

    Article  CAS  Google Scholar 

  4. Rao NN, Gómez-García MR, Kornberg A (2009) Inorganic polyphosphate: essential for growth and survival. Annu Rev Biochem 78:605–647

    Article  CAS  Google Scholar 

  5. Kornberg A (1999) Inorganic polyphosphate: a molecule of many functions. Prog Mol Subcell Biol 23:1–18

    Article  CAS  Google Scholar 

  6. Grose JH, Joss L, Velick SF, Roth JR (2006) Evidence that feedback inhibition of NAD kinase controls responses to oxidative stress. Proc Natl Acad Sci USA 103:7601–7606

    Article  CAS  Google Scholar 

  7. Ochiai A, Mori S, Kawai S, Murata K (2004) Overexpression, purification, and characterization of ATP-NAD kinase of Sphingomonas sp. A1. Protein Expr Purif 36:124–130

    Article  CAS  Google Scholar 

  8. Butler JR, McGuinness ET (1982) Candida utilis NAD+ kinase: purification, properties and affinity gel studies. Int J Biochem 14:839–844

    Article  CAS  Google Scholar 

  9. Tseng YM, Harris BG, Jacobson MK (1979) Isolation and characterization of yeast nicotinamide adenine dinucleotide kinase. Biochim Biophys Acta 568:205–214

    Article  CAS  Google Scholar 

  10. Kawai S, Fukuda C, Mukai T, Murata K (2005) MJ0917 in archaeon Methanococcus jannaschii is a novel NADP phosphatase/NAD kinase. J Biol Chem 280:39200–39207

    Article  CAS  Google Scholar 

  11. Sakuraba H, Kawakami R, Ohshima T (2005) First archaeal inorganic polyphosphate/ATP-dependent NAD kinase, from hyperthermophilic archaeon Pyrococcus horikoshii: cloning, expression, and characterization. Appl Environ Microbiol 71:4352–4358

    Article  CAS  Google Scholar 

  12. Garavaglia S, Galizzi A, Rizzi M (2003) Allosteric regulation of Bacillus subtilis NAD kinase by quinolinic acid. J Bacteriol 185:4844–4850

    Article  CAS  Google Scholar 

  13. Kawai S, Mori S, Mukai T, Matsukawa H, Matuo Y, Murata K (2001) Establishment of a mass-production system for NADP using bacterial inorganic polyphosphate/ATP-NAD kinase. J Biosci Bioeng 92:447–452

    Article  CAS  Google Scholar 

  14. Whitworth DE (2008) Myxobacteria: multicellularity and differentiation. ASM Press, Washington, DC

    Book  Google Scholar 

  15. Lee BU, Lee K, Mendez J, Shimkets LJ (1995) A tactile sensory system of Myxococcus xanthus involves an extracellular NAD(P)+-containing protein. Genes Dev 9:2964–2973

    Article  CAS  Google Scholar 

  16. Kamatani S, Takegawa K, Kimura Y (2018) Catalytic activity profile of polyphosphate kinase 1 from Myxococcus xanthus. Curr Microbiol 75:379–385

    Article  CAS  Google Scholar 

  17. Zhang H, Rao NN, Shiba T, Kornberg A (2005) Inorganic polyphosphate in the social life of Myxococcus xanthus: motility, development, and predation. Proc Natl Acad Sci USA 102:13416–13420

    Article  CAS  Google Scholar 

  18. Kimura Y, Yamamoto H, Kamatani S (2019) Enzymatic characteristics of two adenylate kinases, AdkA and AdkB, from Myxococcus xanthus. J Biochem 165:379–385

    Article  CAS  Google Scholar 

  19. Oka M, Takegawa K, Kimura Y (2015) Enzymatic characterization of a class II lysyl-tRNA synthetase, LysS, from Myxococcus xanthus. Arch Biochem Biophys 579:33–39

    Article  CAS  Google Scholar 

  20. Nakamichi Y, Yoshioka A, Kawai S, Murata K (2013) Conferring the ability to utilize inorganic polyphosphate on ATP-specific NAD kinase. Sci Rep https://doi.org/10.1038/srep02632

  21. Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim S-H (2005) Crystal Structures of an NAD Kinase from Archaeoglobus fulgidus in Complex with ATP, NAD, or NADP. J Mol Biol 354:289–303

    Article  CAS  Google Scholar 

  22. Kawai S, Murata K (2008) Structure and function of NAD kinase and NADP phosphatase: key enzymes that regulate the intracellular balance of NAD(H) and NADP(H). Biosci Biotechnol Biochem 72:919–930

    Article  CAS  Google Scholar 

  23. Mori S, Kawai S, Shi F, Mikami B, Murata K (2005) Molecular conversion of NAD kinase to NADH kinase through single amino acid residue substitution. J Biol Chem 280:24104–24112

    Article  CAS  Google Scholar 

  24. Lundquist R, Olivera BM (1971) Pyridine nucleotide metabolism in Escherichia coli I. Exponential growth. J Biol Chem 246:1107–1116

    CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This study was supported by Grants-in-Aid for Scientific Research from Japan Society for the Promotion of Science (JP16K07667).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yoshio Kimura.

Ethics declarations

Conflict of interest

The authors declare no conflicts of interest associated with this manuscript.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Kimura, Y., Kamimoto, T. & Tanaka, N. Enzymatic Characteristics of a Polyphosphate/ATP-NAD Kinase, PanK, from Myxococcus xanthus. Curr Microbiol 77, 173–178 (2020). https://doi.org/10.1007/s00284-019-01810-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00284-019-01810-9

Keywords

Navigation