Abstract
The spatial localization of proteins within the cytoplasm of bacteria is an underappreciated but critical aspect of cell cycle regulation for many prokaryotes. In Caulobacter crescentus—a model organism for the study of asymmetric cell reproduction in prokaryotes—heterogeneous localization of proteins has been identified as the underlying cause of asymmetry in cell morphology, DNA replication, and cell division. However, significant questions remain. Firstly, the mechanisms by which proteins localize in the organelle-free prokaryotic cytoplasm remain obscure. Furthermore, how variations in the spatial and temporal dynamics of cell fate determinants regulate signaling pathways and orchestrate the complex programs of asymmetric cell division and differentiation are subjects of ongoing research. In this chapter, we review current efforts in investigating these two questions. We describe how mathematical models of spatiotemporal protein dynamics are being used to generate and test competing hypotheses and provide complementary insight about the control mechanisms that regulate asymmetry in protein localization and cell division.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Aaron M, Charbon G, Lam H, Schwarz H, Vollmer W, Jacobs-Wagner C (2007) The tubulin homologue FtsZ contributes to cell elongation by guiding cell wall precursor synthesis in Caulobacter crescentus. Mol Microbiol 64:938–952
Abel S, Chien P, Wassmann P, Schirmer T, Kaever V, Laub MT, Baker TA, Jenal U (2011) Regulatory cohesion of cell cycle and cell differentiation through interlinked phosphorylation and second messenger networks. Mol Cell 43:550–560
Aldridge P, Paul R, Goymer P, Rainey P, Jenal U (2003) Role of the GGDEF regulator PleD in polar development of Caulobacter crescentus. Mol Microbiol 47:1695–1708
Angelastro PS, Sliusarenko O, Jacobs-Wagner C (2010) Polar localization of the CckA histidine kinase and cell cycle periodicity of the essential master regulator CtrA in Caulobacter crescentus. J Bacteriol 192:539–552
Ausmees N, Jacobs-Wagner C (2003) Spatial and temporal control of differentiation and cell cycle progression in Caulobacter crescentus. Annu Rev Microbiol 57:225–247
Beaufay F, De Bolle X, Hallez R (2016) Metabolic control of cell division in α-proteobacteria by a NAD-dependent glutamate dehydrogenase. Commun Integr Biol 9:e1125052
Boutte CC, Henry JT, Crosson S (2012) ppGpp and polyphosphate modulate cell cycle progression in Caulobacter crescentus. J Bacteriol 194:28–35
Bowman GR, Comolli LR, Zhu J, Eckart M, Koenig M, Downing KH, Moerner WE, Earnest T, Shapiro L (2008) A polymeric protein anchors the chromosomal origin/ParB complex at a bacterial cell pole. Cell 134:945–955
Bowman GR, Comolli LR, Gaietta GM, Fero M, Hong S-H, Jones Y, Lee JH, Downing KH, Ellisman MH, McAdams HH, Shapiro L (2010) Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function. Mol Microbiol 76:173–189
Briegel A, Ding HJ, Li Z, Werner J, Gitai Z, Dias DP, Jensen RB, Jensen GJ (2008) Location and architecture of the Caulobacter crescentus chemoreceptor array. Mol Microbiol 69:30–41
Brilli M, Fondi M, Fani R, Mengoni A, Ferri L, Bazzicalupo M, Biondi EG (2010) The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis BMC. Syst Biol 4:52
Charbon G, Cabeen MT, Jacobs-Wagner C (2009) Bacterial intermediate filaments: in vivo assembly, organization, and dynamics of crescentin. Genes Dev 23:1131–1144
Chen JC, Hottes AK, McAdams HH, McGrath PT, Viollier PH, Shapiro L (2006) Cytokinesis signals truncation of the PodJ polarity factor by a cell cycle-regulated protease. Eur Mol Biol Organ J 25:377–386
Chen YE, Tsokos CG, Biondi EG, Perchuk BS, Laub MT (2009) Dynamics of two Phosphorelays controlling cell cycle progression in Caulobacter crescentus. J Bacteriol 191:7417–7429
Chen YE, Tropini C, Jonas K, Tsokos CG, Huang KC, Laub MT (2011) Spatial gradient of protein phosphorylation underlies replicative asymmetry in a bacterium. Proc Natl Acad Sci USA 108:1052–1057
Childers WS, Xu Q, Mann TH, Mathews II, Blair JA, Deacon AM, Shapiro L (2014) Cell fate regulation governed by a repurposed bacterial histidine kinase. PLoS Biol 12:e1001979
Christen B, Fero MJ, Hillson NJ, Bowman G, Hong S-H, Shapiro L, McAdams HH (2010) High-throughput identification of protein localization dependency networks. Proc Natl Acad Sci USA 107:4681–4686
Curtis PD, Brun YV (2010) Getting in the loop: regulation of development in Caulobacter crescentus. Microbiol Mol Biol Rev 74:13–41
Curtis PD, Quardokus EM, Lawler ML, Guo X, Klein D, Chen JC, Arnold RJ, Brun YV (2012) The scaffolding and signalling functions of a localization factor impact polar development. Mol Microbiol 84:1–24
Daniels BR, Perkins EM, Dobrowsky TM, Sun SX, Wirtz D (2009) Asymmetric enrichment of PIE-1 in the Caenorhabditis elegans zygote mediated by binary counterdiffusion. J Cell Biol 184:473–479
Daniels BR, Dobrowsky TM, Perkins EM, Sun SX, Wirtz D (2010) MEX-5 enrichment in the C. elegans early embryo mediated by differential diffusion. Development 137:2579–2585
dos Santos VT, Bisson-Filho AW, Gueiros-Filho FJ (2012) DivIVA-mediated polar localization of ComN, a posttranscriptional regulator of bacillus subtilis. J Bacteriol 194:3661–3669
Ebersbach G, Briegel A, Jensen GJ, Jacobs-Wagner C (2008) A self-associating protein critical for chromosome attachment, division, and polar organization in caulobacter. Cell 134:956–968
Gierer A, Meinhardt H (1972) A theory of biological pattern formation. Kybernetik 12:30–39
Gitai Z, Dye NA, Reisenauer A, Wachi M, Shapiro L (2005) MreB actin-mediated segregation of a specific region of a bacterial chromosome. Cell 120:329–341
Goldberg MB, Bârzu O, Parsot C, Sansonetti PJ (1993) Unipolar localization and ATPase activity of IcsA, a Shigella flexneri protein involved in intracellular movement. J Bacteriol 175:2189–2196
Goley ED, Iniesta AA, Shapiro L (2007) Cell cycle regulation in Caulobacter: location, location, location. J Cell Sci 120:3501–3507
Goley ED, Yeh YC, Hong SH, Fero MJ, Abeliuk E, Mcadams HH, Shapiro L (2011) Assembly of the Caulobacter cell division machine. Mol Microbiol 80:1680–1698
Gora KG, Cantin A, Wohlever M, Joshi KK, Perchuk BS, Chien P, Laub MT (2013) Regulated proteolysis of a transcription factor complex is critical to cell cycle progression in Caulobacter crescentus. Mol Microbiol 87:1277–1289
Hale CA, Meinhardt H, de Boer PA (2001) Dynamic localization cycle of the cell division regulator MinE in Escherichia coli. EMBO J 20:1563–1572
Hallez R, Bellefontaine A-F, Letesson J-J, De Bolle X (2004) Morphological and functional asymmetry in alpha-proteobacteria. Trends Microbiol 12:361–365
Henry JT, Crosson S (2013) Chromosome replication and segregation govern the biogenesis and inheritance of inorganic polyphosphate granules. Mol Biol Cell 24:3177–3186
Hinz AJ, Larson DE, Smith CS, Brun YV (2003) The Caulobacter crescentus polar organelle development protein PodJ is differentially localized and is required for polar targeting of the PleC development regulator. Mol Microbiol 47:929–941
Howard M, Kruse K (2005) Cellular organization by self-organization: mechanisms and models for Min protein dynamics. J Cell Biol 168:533–536
Huitema E, Pritchard S, Matteson D, Radhakrishnan SK, Viollier PH (2006) Bacterial birth scar proteins mark future flagellum assembly site. Cell 124:1025–1037
Iniesta AA, McGrath PT, Reisenauer A, McAdams HH, Shapiro L (2006) A phospho-signaling pathway controls the localization and activity of a protease complex critical for bacterial cell cycle progression. Proc Natl Acad Sci USA 103:10935–10940
Iyer-Biswas S, Wright CS, Henry JT, Lo K, Burov S, Lin Y, Crooks GE, Crosson S, Dinner AR, Scherer NF (2014) Scaling laws governing stochastic growth and division of single bacterial cells. Proc Natl Acad Sci USA 111:15912–15917
Jenal U, Galperin MY (2009) Single domain response regulators: molecular switches with emerging roles in cell organization and dynamics. Curr Opin Microbiol 12:152–160
Jin SK, Sun SX (2009) Morphology of Caulobacter crescentus and the mechanical role of crescentin. Biophys J 96:L47–L49
Knoblich JA (2014) Asymmetric cell division: recent developments and their implications for tumour biology. Nat Rev Mol Cell Biol 11:849–860. Europe PMC Funders Group
Kondo S, Miura T (2010) Reaction-diffusion model as a framework for understanding biological pattern formation. Science 329:1616–1620
Kühn J, Briegel A, Mörschel E, Kahnt J, Leser K, Wick S, Jensen GJ, Thanbichler M (2010) Bactofilins, a ubiquitous class of cytoskeletal proteins mediating polar localization of a cell wall synthase in Caulobacter crescentus. EMBO J 29:327–339
Kunche S, Yan H, Calof AL, Lowengrub JS, Lander AD (2016) Feedback, lineages and self-organizing morphogenesis. PLOS Comput Biol 12:e1004814
Laloux G, Jacobs-Wagner C (2013) Spatiotemporal control of PopZ localization through cell cycle-coupled multimerization. J Cell Biol 201:827–841
Lam H, Matroule J-Y, Jacobs-Wagner C (2003) The asymmetric spatial distribution of bacterial signal transduction proteins coordinates cell cycle events. Dev Cell 5:149–159
Lam H, Schofield WB, Jacobs-Wagner C (2006) A landmark protein essential for establishing and perpetuating the polarity of a bacterial cell. Cell 124:1011–1023
Lawler ML, Brun YV (2007) Advantages and mechanisms of polarity and cell shape determination in Caulobacter crescentus. Curr Opin Microbiol 10:630–637
Lin Y, Crosson S, Scherer NF (2010) Single-gene tuning of Caulobacter cell cycle period and noise, swarming motility, and surface adhesion. Mol Syst Biol 6:445
Matroule J-Y, Lam H, Burnette DT, Jacobs-Wagner C (2004) Cytokinesis monitoring during development; rapid pole-to-pole shuttling of a signaling protein by localized kinase and phosphatase in Caulobacter. Cell 118:579–590
Meinhardt H (1982) Models of biological pattern formation. Research Gate, pp 1–10
Meinhardt H, de Boer PA (2001) Pattern formation in Escherichia coli: a model for the pole-to-pole oscillations of Min proteins and the localization of the division site. Proc Natl Acad Sci USA 98:14202–14207
Meinhardt H, Gierer A (2000) Pattern formation by local self-activation and lateral inhibition. Bioessays 22:753–760
Mitchell D, Smit J (1990) Identification of genes affecting production of the adhesion organelle of Caulobacter crescentus CB2. J Bacteriol 172:5425–5431
Montero Llopis P, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, Emonet T, Jacobs-Wagner C (2010) Spatial organization of the flow of genetic information in bacteria. Nature 466:77–81
Nevo-Dinur K, Govindarajan S, Amster-Choder O (2012) Subcellular localization of RNA and proteins in prokaryotes. Trends Genet 28:314–322
Paul R, Abel S, Wassmann P, Beck A, Heerklotz H, Jenal U (2007) Activation of the diguanylate cyclase PleD by phosphorylation-mediated dimerization. J Biol Chem 282:29170–29177
Paul R, Jaeger T, Abel S, Wiederkehr I, Folcher M, Biondi EG, Laub MT, Jenal U (2008) Allosteric regulation of histidine kinases by their cognate response regulator determines cell fate. Cell 133:452–461
Pierce DL, O’Donnol DS, Allen RC, Javens JW, Quardokus EM, Brun YV (2006) Mutations in DivL and CckA rescue a divJ null mutant of Caulobacter crescentus by reducing the activity of CtrA. J Bacteriol 188:2473–2482
Poindexter JS (1981) The caulobacters: ubiquitous unusual bacteria. Microbiol Rev 45:123–179
Ptacin JL, Gahlmann A, Bowman GR, Perez AM, von Diezmann ARS, Eckart MR, Moerner WE, Shapiro L (2014) Bacterial scaffold directs pole-specific centromere segregation. Proc Natl Acad Sci USA 111:E2046–E2055
Reisinger SJ, Huntwork S, Viollier PH, Ryan KR (2007) DivL performs critical cell cycle functions in caulobacter crescentus independent of kinase activity. J Bacteriol 189:8308–8320
Rudner DZ, Losick R (2010) Protein subcellular localization in bacteria. Cold Spring Harb Perspect Biol 2:a000307
Saberi S, Emberly E (2010) Chromosome driven spatial patterning of proteins in bacteria. Briggs JM (ed). PLoS Comput Biol 6:e1000986
Sciochetti SA, Ohta N, Newton A (2005) The role of polar localization in the function of an essential Caulobacter crescentus tyrosine kinase. Mol Microbiol 56:1467–1480
Segel LA, Jackson JL (1972) Dissipative structure: an explanation and an ecological example. J Theor Biol 37:545–559
Shapiro L, McAdams HH, Losick R (2009) Why and how bacteria localize proteins. Science 326:1225–1228
Shebelut CW, Guberman JM, Van Teeffelen S, Yakhnina AA, Gitai Z (2010) Caulobacter chromosome segregation is an ordered multistep process. Proc Natl Acad Sci USA 107:14194–14198
Sliusarenko O, Heinritz J, Emonet T, Jacobs-Wagner C (2011) High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics. Mol Microbiol 80:612–627
Steinhauer J, Agha R, Pham T, Varga AW, Goldberg MB (1999) The unipolar Shigella surface protein IcsA is targeted directly to the bacterial old pole: IcsP cleavage of IcsA occurs over the entire bacterial surface. Mol Microbiol 32:367–377
Stekhoven DJ, Omasits U, Quebatte M, Dehio C, Ahrens CH (2014) Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism. J Proteomics 99:123–137
Stewart RC (2010) Protein histidine kinases: assembly of active sites and their regulation in signaling pathways. Curr Opin Microbiol 13:133–141
Stock AM, Robinson VL, Goudreau PN (2000) Two-component signal transduction. Annu Rev Biochem 69:183–215
Subramanian K, Paul MR, Tyson JJ (2013) Potential role of a bistable histidine kinase switch in the asymmetric division cycle of Caulobacter crescentus. PLoS Comput Biol 9:e1003221
Subramanian K, Paul MR, Tyson JJ (2014) De novo production of Turing activator generates polarity in pattrn formation. In: Proceedings of the Evry Sping School on Modeling Complex Biological systems in the context of Genomics, Evry, France, pp 131–142
Subramanian K, Paul MR, Tyson JJ (2015) Dynamical localization of DivL and PleC in the asymmetric division cycle of Caulobacter crescentus: a theoretical investigation of alternative models. PLoS Comput Biol 11:e1004348
Takacs CN, Poggio S, Charbon G, Pucheault M, Vollmer W, Jacobs-Wagner C (2010) MreB drives de novo rod morphogenesis in Caulobacter crescentus via remodeling of the cell wall. J Bacteriol 192:1671–1684
Thanbichler M (2009) Spatial regulation in Caulobacter crescentus. Curr Opin Microbiol 12:715–721
Thanbichler M, Shapiro L (2006a) Chromosome organization and segregation in bacteria. J Struct Biol 156:292–303
Thanbichler M, Shapiro L (2006b) MipZ, a spatial regulator coordinating chromosome segregation with cell division in Caulobacter. Cell 126:147–162
Tsokos CG, Perchuk BS, Laub MT (2011) A dynamic complex of signaling proteins uses polar localization to regulate cell fate asymmetry in Caulobacter crescentus. Dev Cell 20:329–341
Turing AM (1952) The chemical basis of morphogenesis. Philos Trans R Soc B Biol Sci 237:37–72
Viollier PH, Sternheim N, Shapiro L (2002) Identification of a localization factor for the polar positioning of bacterial structural and regulatory proteins. Proc Natl Acad Sci USA 99:13831–13836
Werner JN, Chen EY, Guberman JM, Zippilli AR, Irgon JJ, Gitai Z (2009) Quantitative genome-scale analysis of protein localization in an asymmetric bacterium. Proc Natl Acad Sci USA 106:7858–7863
Wheeler RT, Shapiro L (1999) Differential localization of two histidine kinases controlling bacterial cell differentiation. Mol Cell 4:683–694
Winkler J, Seybert A, König L, Pruggnaller S, Haselmann U, Sourjik V, Weiss M, Frangakis AS, Mogk A, Bukau B (2010) Quantitative and spatio-temporal features of protein aggregation in Escherichia coli and consequences on protein quality control and cellular ageing. EMBO J 29:910–923
Wortinger M, Sackett MJ, Brun YV (2000) CtrA mediates a DNA replication checkpoint that prevents cell division in Caulobacter crescentus. Eur Mol Biol Organ J 19:4503–4512
Wu LJ, Errington J (2003) RacA and the Soj-Spo0J system combine to effect polar chromosome segregation in sporulating Bacillus subtilis. Mol Microbiol 49:1463–1475
Wu J, Ohta N, Zhao J-L, Newton A (1999) A novel bacterial tyrosine kinase essential for cell division and differentiation. Proc Natl Acad Sci USA 96:13068–13073
Wylie D, Stock A, Wong CY, Stock J (1988) Sensory transduction in bacterial chemotaxis involves phosphotransfer between Che proteins. Biochem Biophys Res Commun 151:891–896
Yamaichi Y, Bruckner R, Ringgaard S, Moll A, Cameron DE, Briegel A, Jensen GJ, Davis BM, Waldor MK (2012) A multidomain hub anchors the chromosome segregation and chemotactic machinery to the bacterial pole. Genes Dev 26:2348–2360
Acknowledgements
The work on mathematical models presented in this chapter (Subramanian et al. 2013, 2014, 2015) was funded by the National Science Foundation (Division of Mathematical Sciences-1225160). Ongoing investigation of the Caulobacter crescentus cell cycle is currently being funded by the National Science Foundation grant (MCB-1613741). Subramanian is currently a postdoctoral fellow in the Sorger Lab at Harvard Medical School (Funding no: GM107618).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer International Publishing AG
About this chapter
Cite this chapter
Subramanian, K., Tyson, J.J. (2017). Spatiotemporal Models of the Asymmetric Division Cycle of Caulobacter crescentus . In: Tassan, JP., Kubiak, J. (eds) Asymmetric Cell Division in Development, Differentiation and Cancer. Results and Problems in Cell Differentiation, vol 61. Springer, Cham. https://doi.org/10.1007/978-3-319-53150-2_2
Download citation
DOI: https://doi.org/10.1007/978-3-319-53150-2_2
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-53149-6
Online ISBN: 978-3-319-53150-2
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)