Abstract
The biggest challenge to improve the diagnosis and therapies of Craniomaxillofacial conditions is to translate algorithms and software developments towards the creation of holistic patient models. A complete picture of the individual patient for treatment planning and personalized healthcare requires a compilation of clinician-friendly algorithms to provide minimally invasive diagnostic techniques with multimodal image integration and analysis. We describe here the implementation of the open-source Craniomaxillofacial module of the 3D Slicer software, as well as its clinical applications. This paper proposes data management approaches for multisource data extraction, registration, visualization, and quantification. These applications integrate medical images with clinical and biological data analytics, user studies, and other heterogeneous data.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Pieper, S., Halle, M., Kikinis, R.: 3D slicer. In: 2004 2nd IEEE International Symposium Biomedical Imaging Macro to Nano, vol. 1, pp. 632–635 (2004). https://doi.org/10.1109/isbi.2004.1398617
Fedorov, A.A., et al.: 3D slicers as an image computing platform for the quantitative imaging network. Magn. Reson. Imaging 30, 1323–1341 (2012). https://doi.org/10.1016/j.mri.2012.05.001.3D
Enquobahrie, A., Bowers, M., Ibanez, L., Finet, J., Audette, M., Kolasny, A.: Enabling ITK-based processing and 3D slicer MRML scene management in paraview, 1–10 (2012)
Irimia, A., Chambers, M.C., Horn, J.D. Van, Angeles, L.: Automatic segmentation of traumatic brain injury MRI volumes using atlas based classification and 3D slicer (2011)
Documentation/Nightly/Developers/Modules - Slicer Wiki. https://www.slicer.org/wiki/Documentation/Nightly/Developers/Modules. Accessed 03 July 2020
Extensions — 3D Slicer documentation. https://slicer.readthedocs.io/en/latest/developer_guide/extensions.html. Accessed 29 June 2020
Documentation/4.10/Extensions/CMFreg - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/CMFreg. Accessed 30 June 2020
Documentation/4.10/Extensions/MeshToLabelMap - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/MeshToLabelMap. Accessed 30 June 2020
Documentation/4.10/Extensions/AnglePlanes - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/AnglePlanes. Accessed 30 June 2020
Documentation/4.10/Extensions/Q3DC - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/Q3DC. Accessed 30 June 2020
Documentation/4.10/Extensions/EasyClip - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/EasyClip. Accessed 30 June 2020
Documentation/4.10/Extensions/ModelToModelDistance - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/ModelToModelDistance. Accessed 30 June 2020
Documentation/4.10/Extensions/PickAndPaint - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/PickAndPaint. Accessed 30 June 2020
Documentation/4.10/Extensions/ShapePopulationViewer - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/ShapePopulationViewer. Accessed 30 June 2020
Documentation/Nighty/Modules/DatabaseInteractor - Slicer Wiki. https://www.slicer.org/wiki/Documentation/Nighty/Modules/DatabaseInteractor. Accessed 30 June 2020
Documentation/4.10/Extensions/MeshStatistics - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Extensions/MeshStatistics. Accessed 30 June 2020
Documentation/Nighty/Modules/BoneTexture - Slicer Wiki. https://www.slicer.org/wiki/Documentation/Nighty/Modules/BoneTexture#Module_Description. Accessed 30 June 2020
Documentation/Nighty/Modules/ShapeVariationAnalyzer - Slicer Wiki. https://www.slicer.org/wiki/Documentation/Nighty/Modules/ShapeVariationAnalyzer. Accessed 30 June 2020
Documentation/Nightly/Extensions/SpharmPdm - Slicer Wiki. https://www.slicer.org/wiki/Documentation/Nightly/Extensions/SpharmPdm. Accessed 13 July 2020
DCBIA-OrthoLab/MFSDA_Python. https://github.com/DCBIA-OrthoLab/MFSDA_Python. Accessed 07 July 2020
Documentation/4.10/Modules/ModelMaker - Slicer Wiki. https://www.slicer.org/wiki/Documentation/4.10/Modules/ModelMaker. Accessed 02 July 2020
Yatabe, M., et al.: Challenges in measuring angles between craniofacial structures. J. Appl. Oral Sci. 27, e20180380 (2019). https://doi.org/10.1590/1678-7757-2018-0380
Klein, S., Staring, M., Murphy, K., Viergever, M.A., Pluim, J.P.W.: Elastix: a toolbox for intensity-based medical image registration. IEEE Trans. Med. Imaging 29, 196–205 (2010). https://doi.org/10.1109/TMI.2009.2035616
Shamonin, D.P., Bron, E.E., Lelieveldt, B.P.F., Smits, M., Klein, S., Staring, M.: Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer’s disease. Front. Neuroinform. 7, 50 (2010). https://doi.org/10.3389/fninf.2013.00050
NITRC: SPHARM-PDM Toolbox: Tool/Resource Info. https://www.nitrc.org/projects/spharm-pdm. Accessed 13 July 2020
Acknowledgements
This study was supported by NIH grants DE R01DE024450, R21DE025306 and R01 EB021391.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2020 Springer Nature Switzerland AG
About this paper
Cite this paper
Bianchi, J. et al. (2020). 3D Slicer Craniomaxillofacial Modules Support Patient-Specific Decision-Making for Personalized Healthcare in Dental Research. In: Syeda-Mahmood, T., et al. Multimodal Learning for Clinical Decision Support and Clinical Image-Based Procedures. CLIP ML-CDS 2020 2020. Lecture Notes in Computer Science(), vol 12445. Springer, Cham. https://doi.org/10.1007/978-3-030-60946-7_5
Download citation
DOI: https://doi.org/10.1007/978-3-030-60946-7_5
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-60945-0
Online ISBN: 978-3-030-60946-7
eBook Packages: Computer ScienceComputer Science (R0)