Skip to main content

Brief Summary of the Most Important Molecular Genetic Methods (PCR, qPCR, Microarray, Next-Generation Sequencing, etc.)

  • Chapter
  • First Online:
Genetics of Endocrine Diseases and Syndromes

Part of the book series: Experientia Supplementum ((EXS,volume 111))

Abstract

Molecular genetic methods have become an organic part of everyday clinical practice. In the past, molecular diagnostic tests were carried out for genetic diagnosis of a particular monogenic disease. In these situations the tests itself were used for identification of one particular genetic alteration (e.g., point mutation or deletion) of the gene of interest. Later, parallel with the development of the technology, the focus has shifted by allowing investigating at once targeted gene panels and even the whole exome/genome behind a suspected genetic disorder. Historically for these purposes, array-based methods (oligonucleotide arrays) and then next-generation sequencing-based methods have been used. High-throughput methods have been fundamentally transforming the everyday, routine genetic diagnostics, but older molecular techniques still have a role in clinical genetics. Here, we summarize the most important molecular genetic methods and shed light to the advantages and disadvantages of their application in routine diagnostics. We mainly focus on methods used for detection of germline alterations.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Abbreviations

aCGH:

Array comparative genomic hybridization

ARMS:

Amplification refractory mutation system

AS-PCR:

Allele-specific PCR

cDNA:

Complementary DNA

CGH:

Comparative genomic hybridization

CNV:

Copy number variations

cT:

Cycle threshold

DDGE:

denaturing gradient gel electrophoresis

ddNTP:

Dideoxyribonucleotide triphosphate

DNA:

Deoxyribonucleic acid

dNTP:

Deoxyribonucleotide triphosphate (adenine, cytosine, guanine, and thymine triphosphate: dATP, dCTP, dGTP, and dTTP, respectively)

dPCR:

Digital polymerase chain reaction

dsDNA:

Double-stranded DNA

EDTA:

Ethylenediaminetetraacetic acid

FRET:

Fluorescence resonance energy transfer

HA:

Heteroduplex analysis

HRM:

High-resolution melting analysis

IVD:

In vitro diagnosis

MLPA:

Multiplex ligation-dependent probe amplification

NGS:

Next-generation sequencing

OD:

Optical density

PASA:

PCR amplification of specific alleles

PCR:

Polymerase chain reaction

qPCR:

Quantitative polymerase chain reaction

RFLP:

Restriction fragment length polymorphism

RT-qPCR:

Reverse transcription quantitative polymerase chain reaction

SNP:

Single-nucleotide polymorphism

SNV:

Single-nucleotide variants

SSCP:

Single-strand conformation polymorphism (SSCP)

STR:

Small tandem repeat

UPD:

Uniparental disomy

VAF:

Variant allele frequency

VUS:

Variant of uncertain significance

WES:

Whole-exome sequencing

WGS:

Whole-genome sequencing

References

Download references

Acknowledgments

This work has been supported by the National Excellence Program to Attila Patócs and ÚNKP-18-4-SE-8 New National Excellence Program of The Ministry of Human Capacities to Henriett Butz. Henriett Butz is a recipient of Bolyai Research Fellowship of Hungarian Academy of Sciences.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Attila Patócs .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Butz, H., Patócs, A. (2019). Brief Summary of the Most Important Molecular Genetic Methods (PCR, qPCR, Microarray, Next-Generation Sequencing, etc.). In: Igaz, P., Patócs, A. (eds) Genetics of Endocrine Diseases and Syndromes. Experientia Supplementum, vol 111. Springer, Cham. https://doi.org/10.1007/978-3-030-25905-1_4

Download citation

Publish with us

Policies and ethics