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Synthesis of Peptide Arrays Using SPOT-Technology and the CelluSpots-Method

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Peptide Microarrays

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 570))

Abstract

Peptide synthesis on cellulose using the SPOT technology follows the standard Fmoc-chemistry and can be performed manually or automated. This method allows the synthesis of low-cost peptide arrays containing around 900 large spots of addressable peptides on a cellulose sheet of 19 cm × 29 cm. These peptides can be cleaved from the cellulose support by ammonia gas and afterward spotted on glass microchips. Alternatively, the peptides can be synthesized on modified cellulose discs and CelluSpot microarrays can be produced.

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References

  1. Houghten, R. A. (1985) General method for the rapid solid-phase synthesis of large numbers of peptides: Specificity of antigen–antibody interaction at the level of individual amino acids. Proceedings of the National Academy of Sciences (USA) 82, 5131–5135.

    Article  CAS  Google Scholar 

  2. Pellois, J. P., Zhou, X.; Srivannavit, O., Zhou, T., Gulari, E. and Gao, X. (2002) Individually addressable parallel peptide synthesis on microchips. Nature Biotechnology 20, 922–926.

    Article  PubMed  CAS  Google Scholar 

  3. Geysen, H. M., Meloen, R. H. and Barteling, S. J. (1984) Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid. Proceedings of the National Academy of Sciences (USA) 82, 3998–4002.

    Article  Google Scholar 

  4. Frank, R. (1992) Spot-synthesis: An easy technique for the positionally addressable, parallel chemical synthesis on a membrane support. Tetrahedron 48, 9217–9232.

    Article  CAS  Google Scholar 

  5. Paschke, M. (2006) Phage display systems and their applications. Applied Microbiology and Biotechnology 70, 2–11.

    Article  PubMed  CAS  Google Scholar 

  6. Westerlund-Wikstrom, B. (2000) Peptide display on bacterial flagella: principles and applications. International Journal of Medical Microbiology 290, 223–230.

    Article  PubMed  CAS  Google Scholar 

  7. Yan, X. and Xu, Z. (2006) Ribosome-display technology: applications for directed evolution of functional proteins. Drug Discovery Today 11, 911–916.

    Article  PubMed  CAS  Google Scholar 

  8. Reineke, U., Schneider-Mergener, J. and Schutkowski, M. (2006) Peptide arrays in proteomics and drug discovery, in BioMEMS and Biomedical Nanotechnology, Vol. II: Micro/Nano technologies for genomics and proteomics (Ferrari, M., Ozkan, M. and Heller, M. I., eds.), Springer US, New York/Boston, USA, pp. 161–282.

    Google Scholar 

  9. Zander, N., Beutling, U., Dikmans, A., Thiele, S. and Frank, R. (2005) A special cellulose membrane support for the combinatorial and parallel synthesis of peptide libraries suitable for the SC2-type manufacturing of high density multi-purpose chemical micro-arrays, in Peptides 2004: Proceedings of the 3rd International and 28th European Peptide Symposium (Flegel, M., Fridkin, M., Gilon, C. and Slaninova, J., eds.), Kenes International, Geneva, Switzerland, pp. 405–406.

    Google Scholar 

  10. Dikmans, A., Beutling, U., Schmeisser, E., Thiele, S. and Frank, R. (2006) SC2: A novel process for manufacturing multipurpose high-density chemical microarrays. QSAR & Combinatorial Science 25, 1069–1080.

    Article  CAS  Google Scholar 

  11. Frank, R., Güler, S., Krause, S. and Lindenmaier, W. (1991) Facile and rapid “spot-synthesis” of large numbers of peptides on membrane sheets, in Peptides 1990: Proceedings of the 21st European Peptide Symposium (Giralt, E. and Andreu, D., eds.), ESCOM, Leiden, NL, pp. 151–152.

    Google Scholar 

  12. Hilpert, K., Winkler, D. F. H. and Hancock, R. E. W. (2007) Cellulose-bound peptide arrays: Chemistry and Applications. Biotechnology and Genetic Engineering Reviews 24, 31–106.

    CAS  Google Scholar 

  13. Kramer, A. and Schneider-Mergener, J. (1998) Synthesis and screening of peptide libraries on continuous cellulose membrane supports. Methods in Molecular Biology 87, 25–39.

    PubMed  CAS  Google Scholar 

  14. Kramer, A., Reineke, U., Dong, L., Hoffmann, B., Hoffmüller, U., Winkler, D., Volkmer-Engert, R. and Schneider-Mergener, J. (1999) Spot synthesis: observations and optimizations. Journal of Peptide Research 54, 319–327.

    Article  PubMed  CAS  Google Scholar 

  15. Weiser, A.A., Or-Guil, M., Tapia, V., Leichsenring, A., Schuchardt, J., Frömmel, C. and Volkmer-Engert, R. (2005) SPOT synthesis: Reliability of array-based measurement of peptide binding affinity. Analytical Biochemistry 342, 300–311.

    Article  PubMed  CAS  Google Scholar 

  16. Molina, F., Laune, D., Gougat, C., Pau, B. and Granier, C. (1996) Improved performances of spot multiple peptide synthesis. Peptide Research 9, 151–155.

    PubMed  CAS  Google Scholar 

  17. Toepert, F., Knaute, T., Guffler, S., Pires, J. R., Matzdorf, T., Oschkinat, H. and Schneider-Mergener, J. (2003) Combining SPOT synthesis and native peptide ligation to create large arrays of WW protein domains. Angewandte Chemie International Edition 42, 1136–1140.

    Article  CAS  Google Scholar 

  18. Toepert, F., Pires, J.R., Landgraf, C., Oschkinat, H. and Schneider-Mergener, J. (2001) Synthesis of an array comprising 837 variants of the hYAP WW protein domain. Angewandte Chemie International Edition 40, 897–900.

    Article  CAS  Google Scholar 

  19. Heine, N., Ast, T., Schneider-Mergener, J., Reineke, U., Germeroth, L. and Wenschuh, H. (2003) Synthesis and screening of peptoid arrays on cellulose membranes. Tetrahedron 59, 9919–9930.

    Article  CAS  Google Scholar 

  20. Blackwell, H. E. (2006) Hitting the SPOT: small-molecule macroarrays advance combinatorial synthesis. Current Opinion in Chemistry and Biology 10, 203–212.

    Article  CAS  Google Scholar 

  21. Winkler, D. F. H. and McGeer, P. L. (2008) Protein labeling and biotinylation of peptides during spot synthesis using biotin p-nitrophenyl ester. Proteomics 8, 961–967.

    Google Scholar 

  22. Kim, D.-H., Shin, D.-S. and Lee, Y.-S. (2007) Spot arrays on modified glass surfaces for efficient SPOT synthesis and on-chip bioassay of peptides. Journal of Peptide Science 13, 625–633.

    Article  PubMed  CAS  Google Scholar 

  23. Licha, K., Bhargava, S., Rheinländer, C., Becker, A., Schneider-Mergener, J. and Volkmer-Engert, R. (2000) Highly parallel nano-synthesis of cleavable peptide–dye conjugates on cellulose membranes. Tetrahedron Letters 41, 1711–1715.

    Article  CAS  Google Scholar 

  24. Reineke, U., Bhargava, S., Schutkowski, M., Landgraf, C., Germeroth, L., Fischer,G. and Schneider-Mergener, J. (1999) Spatial addressable fluorescence-quenched peptide libraries for the identification and characterization of protease substrates, in Peptides 1998: Proceedings of the 25th European Peptide Symposium (Bajusz, S. and Hudecz, F., eds.) Akademiai Kiado, Budapest, Hungary, pp. 562–563.

    Google Scholar 

  25. Andresen, H., Grötzinger, C., Zarse, K., Kreuzer, O. J., Ehrentreich-Förster, E. and Bier, F. F. (2006) Functional peptide microarrays for specific and sensitive antibody diagnostics. Proteomics 6, 1376–1384.

    Article  PubMed  CAS  Google Scholar 

  26. Maier, S., Frank, M., Rau, H., Lewandrowski, P., Uhrig, R., Keil, O., Deppe, H., Müller, N., Vanier, C., Mannsperger, H., Zepter, S. and Junker, H.-D. (2006) Synthesis and quality control of thiol compound libraries for chemical microarrays. QSAR & Combinatorial Science 25, 1047–1054.

    Article  CAS  Google Scholar 

  27. Hahn, M., Winkler, D., Welfle, K., Misselwitz, R., Welfle, H., Wessner, H., Zahn, G., Scholz, C., Seifert, M., Harkins, R., Schneider-Mergener, J. and Höhne, W. (2001) Cross-reactive binding of cyclic peptides to an anti-TGFα antibody Fab fragment. An X-ray structural and thermodynamic analysis. The Journal of Molecular Biology 314, 293–309.

    Article  CAS  Google Scholar 

  28. Hilpert, K., Hansen, G., Wessner, H., Volkmer-Engert, R. and Höhne, W. (2005) Complete substitutional analysis of a sunflower trypsin inhibitor with different serine proteases. Journal of Biochemistry (Tokyo) 138, 383–390.

    Article  CAS  Google Scholar 

  29. Beutling, U., Dikmans, A., Thiele, S. and Frank, R. (2005) A novel process for manufacturing high density multi-purpose chemical microarrays, in Peptides 2004: Proceedings of the 3rd International and 28th European Peptide Symposium (Flegel, M., Fridkin, M., Gilon, C. and Slaninova, J., eds.), Kenes International, Geneva, Switzerland, pp. 152–153.

    Google Scholar 

  30. Hilpert, K., Winkler, D. F. H., Hancock, R. E. W. (2007) Peptide arrays on cellulose support: SPOT synthesis – a time and cost efficient method for synthesis of large numbers of peptides in a parallel and addressable fashion. Nature Protocols 2, 1333–1349.

    Article  PubMed  CAS  Google Scholar 

  31. Fields, G. B. and Noble, R. L. (1990) Solid phase synthesis utilizing 9-fluorenylmethoxycarbonyl amino acids. International Journal of Peptide and Protein Research 35, 161–214.

    Article  PubMed  CAS  Google Scholar 

  32. Zander, N. and Gausepohl, H. (2002) Chemistry of Fmoc peptide synthesis on membranes, in Peptide Arrays on Membrane Support. (Koch, J. and Mahler, M., eds.) Springer-Verlag, Berlin Heidelberg, Germany, pp. 23–39.

    Google Scholar 

  33. Atherton, E. and Sheppard, R.C. (eds.) (1989) 7.2. Activated esters of Fmoc-amino acids, in Solid phase peptide synthesis – a practical approach. IRL press at Oxford University Press, Oxford, UK, pp. 76–78.

    Google Scholar 

  34. Gausepohl, H. and Behn, C. (2002) Automated synthesis of solid-phase bound peptides, in Peptide Arrays on Membrane Support (Koch, J. and Mahler, M., eds.), Springer-Verlag, Berlin Heidelberg, Germany, pp. 55–68.

    Google Scholar 

  35. Ast, T., Heine, N., Germeroth, L., Schneider-Mergener, J. and Wenschuh, H. (1999) Efficient assembly of peptomers on continuous surfaces. Tetrahedron Letters 40, 4317–4318.

    Article  CAS  Google Scholar 

  36. Weiler, J., Gausepohl, H., Hauser, N., Jensen, O.N. and Hoheisel, J. D. (1997) Hybridisation based DNA screening on peptide nucleic acid (PNA) oligomer arrays. Nucleic Acids Research 25, 2792–2799.

    Article  PubMed  CAS  Google Scholar 

  37. Krchnak, V., Wehland, J., Plessmann, U., Dodemont, H., Gerke, V. and Weber, W. (1988) Noninvasive continuous monitoring of solid phase peptide synthesis by acid–base indicator. Collection of Czechoslovak Chemical Communications 53, 2542–2548.

    Article  CAS  Google Scholar 

  38. Lizcano, J. M., Deak, M., Morrice, N., Kieloch, A., Hastie, C.J., Dong, L., Schutkowski, M., Reimer, U. and Alessi, D. R. (2002) Molecular basis for the substrate specificity of NIMA-related kinase-6 (NEK-6). The Journal of Biological Chemistry 277, 27839–27849.

    Article  PubMed  CAS  Google Scholar 

  39. Bhargava, S., Licha, K., Knaute, T., Ebert, B., Becker, A., Grötzinger, C., Hessenius, C., Wiedemann, B., Schneider-Mergener, J. and Volkmer-Engert, R. (2002) A complete substitutional analysis of VIP for better tumor imaging properties. Journal of Molecular Recognition 15, 145–153.

    Article  PubMed  CAS  Google Scholar 

  40. Kamradt, T. and Volkmer-Engert, R. (2004) Cross-reactivity of T lymphocyctes in infection and autoimmunity. Molecular Diversity 8, 271–280.

    Article  PubMed  CAS  Google Scholar 

  41. Boisguerin, P., Leben, R., Ay, B., Radziwill, G., Moelling, K., Dong, L. and Volkmer-Engert, R. (2004) An improved method for the synthesis of cellulose membrane-bound peptides with free C termini is useful for the PDZ domain binding studies. Chemistry and Biology 11, 449–459.

    Article  PubMed  CAS  Google Scholar 

  42. Volkmer-Engert, R., Hoffmann, B. and Schneider-Mergener, J. (1997) Stable attachment of the HMB-linker to continuous cellulose membranes for parallel solid phase spot synthesis. Tetrahedron Letters 38, 1029–1032.

    Article  CAS  Google Scholar 

  43. Scharn, D., Wenschuh, H., Reineke, U., Schneider-Mergener, J. and Germeroth, L. (2000) Spatially addressed synthesis of amino- and amino-oxy-substituted 1,3,5-triazine arrays on polymeric membranes. Journal of Combinatorial Chemistry 2, 361–369.

    Article  PubMed  CAS  Google Scholar 

  44. Frank, R., Hoffmann, S., Overwin, H., Behn, C. and Gausepohl, H. (1996) Easy preparation of synthetic peptide repertoires for immunological studies utilizing SPOT synthesis, in: Peptides in Immunology (Schneider, C. H., ed.), John Wiley & Sons, Ltd., New York, USA, pp. 197–204.

    Google Scholar 

  45. Koch, J. and Mahler, M. (eds.) (2002) Peptide Arrays on Membrane Support, Springer-Verlag, Berlin Heidelberg, Germany.

    Google Scholar 

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Winkler, D.F., Hilpert, K., Brandt, O., Hancock, R.E. (2009). Synthesis of Peptide Arrays Using SPOT-Technology and the CelluSpots-Method. In: Cretich, M., Chiari, M. (eds) Peptide Microarrays. Methods in Molecular Biology™, vol 570. Humana Press. https://doi.org/10.1007/978-1-60327-394-7_5

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  • DOI: https://doi.org/10.1007/978-1-60327-394-7_5

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  • Print ISBN: 978-1-60327-393-0

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