Abstract
The HCV cell culture system, consisting of the JFH-1 strain and HuH-7 cells, has been broadly used to assess the complete HCV life cycle in cultured cells. However, being able to use multiple HCV strains in such a system is vital for future studies of this virus. We recently established a novel HCV cell culture system using another HCV genotype 2a strain, J6CF, which replicates in chimpanzees but not in cultured cells. We identified effective cell culture-adaptive mutations and established a replication-competent J6CF strain with minimum modifications in cultured cells. The strategy of how we established the replication-competent HCV strain and how we identified the effective cell culture-adaptive mutations is described here and could prove useful for establishing other replication-competent HCV strains.
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References
Choo QL, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M (1989) Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359–362
Yanagi M, Purcell RH, Emerson SU, Bukh J (1997) Transcripts from a single full-length cDNA clone of hepatitis C virus are infectious when directly transfected into the liver of a chimpanzee. Proc Natl Acad Sci U S A 94:8738–8743
Lanford RE, Lee H, Chavez D, Guerra B, Brasky KM (2001) Infectious cDNA clone of the hepatitis C virus genotype 1 prototype sequence. J Gen Virol 82:1291–1297
Yanagi M, Purcell RH, Emerson SU, Bukh J (1999) Hepatitis C virus: an infectious molecular clone of a second major genotype (2a) and lack of viability of intertypic 1a and 2a chimeras. Virology 262:250–263
Bukh J, Pietschmann T, Lohmann V, Krieger N, Faulk K, Engle RE et al (2002) Mutations that permit efficient replication of hepatitis C virus RNA in Huh-7 cells prevent productive replication in chimpanzees. Proc Natl Acad Sci U S A 99:14416–14421
Lohmann V, Korner F, Koch J, Herian U, Theilmann L, Bartenschlager R (1999) Replication of subgenomic hepatitis C virus RNAs in a hepatoma cell line. Science 285:110–113
Ikeda M, Yi M, Li K, Lemon SM (2002) Selectable subgenomic and genome-length dicistronic RNAs derived from an infectious molecular clone of the HCV-N strain of hepatitis C virus replicate efficiently in cultured Huh7 cells. J Virol 76:2997–3006
Pietschmann T, Lohmann V, Kaul A, Krieger N, Rinck G, Rutter G et al (2002) Persistent and transient replication of full-length hepatitis C virus genomes in cell culture. J Virol 76:4008–4021
Blight KJ, McKeating JA, Marcotrigiano J, Rice CM (2003) Efficient replication of hepatitis C virus genotype 1a RNAs in cell culture. J Virol 77:3181–3190
Wakita T, Pietschmann T, Kato T, Date T, Miyamoto M, Zhao Z et al (2005) Production of infectious hepatitis C virus in tissue culture from a cloned viral genome. Nat Med 11:791–796
Kato T, Date T, Miyamoto M, Furusaka A, Tokushige K, Mizokami M et al (2003) Efficient replication of the genotype 2a hepatitis C virus subgenomic replicon. Gastroenterology 125:1808–1817
Date T, Kato T, Miyamoto M, Zhao Z, Yasui K, Mizokami M et al (2004) Genotype 2a hepatitis C virus subgenomic replicon can replicate in HepG2 and IMY-N9 cells. J Biol Chem 279:22371–22376
Kato T, Date T, Miyamoto M, Zhao Z, Mizokami M, Wakita T (2005) Nonhepatic cell lines HeLa and 293 support efficient replication of the hepatitis C virus genotype 2a subgenomic replicon. J Virol 79:592–596
Kato T, Choi Y, Elmowalid G, Sapp RK, Barth H, Furusaka A et al (2008) Hepatitis C virus JFH-1 strain infection in chimpanzees is associated with low pathogenicity and emergence of an adaptive mutation. Hepatology 48:732–740
Li YP, Ramirez S, Jensen SB, Purcell RH, Gottwein JM, Bukh J (2012) Highly efficient full-length hepatitis C virus genotype 1 (strain TN) infectious culture system. Proc Natl Acad Sci U S A 109:19757–19762
Li YP, Ramirez S, Mikkelsen L, Bukh J (2015) Efficient infectious cell culture systems of the hepatitis C virus (HCV) prototype strains HCV-1 and H77. J Virol 89:811–823
Date T, Morikawa K, Tanaka Y, Tanaka-Kaneko K, Sata T, Mizokami M et al (2012) Replication and infectivity of a novel genotype 1b hepatitis C virus clone. Microbiol Immunol 56:308–317
Li YP, Ramirez S, Gottwein JM, Scheel TK, Mikkelsen L, Purcell RH et al (2012) Robust full-length hepatitis C virus genotype 2a and 2b infectious cultures using mutations identified by a systematic approach applicable to patient strains. Proc Natl Acad Sci U S A 109:E1101–E1110
Date T, Kato T, Kato J, Takahashi H, Morikawa K, Akazawa D et al (2012) Novel cell culture-adapted genotype 2a hepatitis C virus infectious clone. J Virol 86:10805–10820
Ramirez S, Li YP, Jensen SB, Pedersen J, Gottwein JM, Bukh J (2014) Highly efficient infectious cell culture of three hepatitis C virus genotype 2b strains and sensitivity to lead protease, nonstructural protein 5A, and polymerase inhibitors. Hepatology 59:395–407
Kim S, Date T, Yokokawa H, Kono T, Aizaki H, Maurel P et al (2014) Development of hepatitis C virus genotype 3a cell culture system. Hepatology 60:1838–1850
Okamoto H, Okada S, Sugiyama Y, Kurai K, Iizuka H, Machida A et al (1991) Nucleotide sequence of the genomic RNA of hepatitis C virus isolated from a human carrier: comparison with reported isolates for conserved and divergent regions. J Gen Virol 72:2697–2704
Murayama A, Date T, Morikawa K, Akazawa D, Miyamoto M, Kaga M et al (2007) The NS3 helicase and NS5B-to-3'X regions are important for efficient hepatitis C virus strain JFH-1 replication in Huh7 cells. J Virol 81:8030–8040
Murayama A, Weng L, Date T, Akazawa D, Tian X, Suzuki T et al (2010) RNA polymerase activity and specific RNA structure are required for efficient HCV replication in cultured cells. PLoS Pathog 6:e1000885
Murayama A, Sugiyama N, Suzuki R, Moriyama M, Nakamura N, Mochizuki H et al (2017) Amino acid mutations in the NS4A region of hepatitis C virus contribute to viral replication and infectious virus production. J Virol 91(4):e02124-16
Zhong J, Gastaminza P, Cheng G, Kapadia S, Kato T, Burton DR et al (2005) Robust hepatitis C virus infection in vitro. Proc Natl Acad Sci U S A 102:9294–9299
Nakabayashi H, Taketa K, Miyano K, Yamane T, Sato J (1982) Growth of human hepatoma cells lines with differentiated functions in chemically defined medium. Cancer Res 42:3858–3863
van den Hoff MJ, Moorman AF, Lamers WH (1992) Electroporation in ‘intracellular’ buffer increases cell survival. Nucleic Acids Res 20:2902
Murayama A, Sugiyama N, Watashi K, Masaki T, Suzuki R, Aizaki H et al (2012) Japanese reference panel of blood specimens for evaluation of hepatitis C virus RNA and core antigen quantitative assays. J Clin Microbiol 50:1943–1949
Lindenbach BD (2009) Measuring HCV infectivity produced in cell culture and in vivo. Methods Mol Biol 510:329–336
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Kato, T., Murayama, A., Wakita, T. (2019). Establishment of Replication-Competent HCV Strain with Minimum Modifications. In: Law, M. (eds) Hepatitis C Virus Protocols . Methods in Molecular Biology, vol 1911. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8976-8_4
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DOI: https://doi.org/10.1007/978-1-4939-8976-8_4
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