Abstract
The heterologous expression of membrane proteins driven by T7 RNA polymerase in E. coli is often limited by a mismatch between the transcriptional and translational rates resulting in saturation of the Sec translocon and non-insertion of the membrane protein. In order to optimize the levels of folded, functional inserted protein, it is important to correct this mismatch. In this protocol, we describe the use of titratable strains of E. coli where two small-molecule inducers are used in a bi-variate analysis to optimize the expression levels by fine tuning the transcriptional and translational rates of an eGFP-tagged membrane protein.
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References
Wagner S, Baars L, Ytterberg AJ et al (2007) Consequences of membrane protein overexpression in Escherichia coli. Mol Cell Proteomics 6:1527–1550
Bill RM, Henderson PJ, Iwata S et al (2011) Overcoming barriers to membrane protein structure determination. Nat Biotechnol 29:335–340
Marreddy RK, Geertsma ER, Permentier HP et al (2010) Amino acid accumulation limits the overexpression of proteins in Lactococcus lactis. PLoS One 5:e10317
Angov E, Hillier CJ, Kincaid RL et al (2008) Heterologous protein expression is enhanced by harmonizing the codon usage frequencies of the target gene with those of the expression host. PLoS One 3:e2189
Arechaga I, Miroux B, Karrasch S et al (2000) Characterisation of new intracellular membranes in Escherichia coli accompanying large scale over-production of the b subunit of F(1)F(o) ATP synthase. FEBS Lett 482:215–219
Loll PJ (2003) Membrane protein structural biology: the high throughput challenge. J Struct Biol 142:144–153
Wagner S, Bader ML, Drew D et al (2006) Rationalizing membrane protein overexpression. Trends Biotechnol 24:364–371
Drew DE, von Heijne G, Nordlund P et al (2001) Green fluorescent protein as an indicator to monitor membrane protein overexpression in Escherichia coli. FEBS Lett 507:220–224
Sonoda Y, Newstead S, Hu NJ et al (2011) Benchmarking membrane protein detergent stability for improving throughput of high-resolution X-ray structures. Structure 19:17–25
Lee C, Kang HJ, Hjelm A et al (2014) MemStar: a one-shot Escherichia coli-based approach for high-level bacterial membrane protein production. FEBS Lett 588:3761–3769
Drew D, Lerch M, Kunji E et al (2006) Optimization of membrane protein overexpression and purification using GFP fusions. Nat Methods 3:303–313
Drew D, Slotboom DJ, Friso G et al (2005) A scalable, GFP-based pipeline for membrane protein overexpression screening and purification. Protein Science: A Publication of the Protein Society 14:2011–2017
Mus-Veteau I (2010) Heterologous expression of membrane proteins for structural analysis. Methods Mol Biol 601:1–16
Studier FW, Moffatt BA (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol 189:113–130
Studier FW (1991) Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J Mol Biol 219:37–44
Dubendorff JW, Studier FW (1991) Controlling basal expression in an inducible T7 expression system by blocking the target T7 promoter with lac repressor. J Mol Biol 219:45–59
Klepsch MM, Persson JO, de Gier JW (2011) Consequences of the overexpression of a eukaryotic membrane protein, the human KDEL receptor, in Escherichia coli. J Mol Biol 407:532–542
Miroux B, Walker JE (1996) Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J Mol Biol 260:289–298
Wagner S, Klepsch MM, Schlegel S et al (2008) Tuning Escherichia coli for membrane protein overexpression. Proc Natl Acad Sci U S A 105:14371–14376
Schlegel S, Lofblom J, Lee C et al (2012) Optimizing membrane protein overexpression in the Escherichia coli strain Lemo21(DE3). J Mol Biol 423:648–659
Hjelm A, Schlegel S, Baumgarten T et al (2013) Optimizing E. coli-based membrane protein production using Lemo21(DE3) and GFP-fusions. Methods Mol Biol 1033:381–400
Morra R, Shankar J, Robinson CJ et al (2016) Dual transcriptional-translational cascade permits cellular level tuneable expression control. Nucleic Acids Res 44:e21
Chao YP, Chiang CJ, Hung WB (2002) Stringent regulation and high-level expression of heterologous genes in Escherichia coli using T7 system controllable by the araBAD promoter. Biotechnol Prog 18:394–400
Hartnett J, Gracyalny J, Slater MR (2006) The Single Step (KRX) Competent Cells: Efficient Cloning and High Protein Yields. Promega Notes vol. 96, Promega Corp
Bird LE, Rada H, Verma A et al (2015) Green fluorescent protein-based expression screening of membrane proteins in Escherichia coli. J Vis Exp 6:e52357
Guzman LM, Belin D, Carson MJ et al (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol 177:4121–4130
Haldimann A, Daniels LL, Wanner BL (1998) Use of new methods for construction of tightly regulated arabinose and rhamnose promoter fusions in studies of the Escherichia coli phosphate regulon. J Bacteriol 180:1277–1286
Terpe K (2006) Overview of bacterial expression systems for heterologous protein production: from molecular and biochemical fundamentals to commercial systems. Appl Microbiol Biotechnol 72:211–222
Egan SM, Schleif RF (1993) A regulatory cascade in the induction of rhaBAD. J Mol Biol 234:87–98
Giacalone MJ, Gentile AM, Lovitt BT et al (2006) Toxic protein expression in Escherichia coli using a rhamnose-based tightly regulated and tunable promoter system. Biotechniques 40:355–364
Serganov A, Nudler E (2013) A decade of riboswitches. Cell 152:17–24
Chen G, Yanofsky C (2003) Tandem transcription and translation regulatory sensing of uncharged tryptophan tRNA. Science 301:211–213
Grundy FJ, Henkin TM (1993) tRNA as a positive regulator of transcription antitermination in B. subtilis. Cell 74:475–482
Li GW, Oh E, Weissman JS (2012) The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 484:538–541
Barrick JE, Breaker RR (2007) The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol 8:R239
Mandal M, Breaker RR (2004) Gene regulation by riboswitches. Nat Rev Mol Cell Biol 5:451–463
Winkler WC, Breaker RR (2003) Genetic control by metabolite-binding riboswitches. Chembiochem: Eur J Chem Biol 4:1024–1032
Link KH, Breaker RR (2009) Engineering ligand-responsive gene-control elements: lessons learned from natural riboswitches. Gene Ther 16:1189–1201
Dixon N, Duncan JN, Geerlings T et al (2010) Reengineering orthogonally selective riboswitches. Proc Natl Acad Sci U S A 107:2830–2835
Dixon N, Robinson CJ, Geerlings T et al (2012) Orthogonal riboswitches for tuneable coexpression in bacteria. Angewandte Chemie 51:3620–3624
Bird LE (2011) High throughput construction and small scale expression screening of multi-tag vectors in Escherichia coli. Methods 55:29–37
Bird LE, Rada H, Flanagan J et al (2014) Application of In-Fusion cloning for the parallel construction of E. coli expression vectors. Methods Mol Biol 1116:209–234
Waldo GS, Standish BM, Berendzen J et al (1999) Rapid protein-folding assay using green fluorescent protein. Nat Biotechnol 17:691–695
Hsieh JM, Besserer GM, Madej MG et al (2010) Bridging the gap: a GFP-based strategy for overexpression and purification of membrane proteins with intra and extracellular C-termini. Protein Sci 19:868–880
Acknowledgments
The Oxford Protein Production Facility-UK is supported by the UK Medical Research Council (MR/K018779/1) and the Manchester Group are supported by the Biotechnology and Biology Research Council, ND holds a BBSRC David Phillips Fellowship [BB/K014773/1].
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Morra, R., Young, K., Casas-Mao, D., Dixon, N., Bird, L.E. (2017). Optimization of Membrane Protein Production Using Titratable Strains of E. coli . In: Burgess-Brown, N. (eds) Heterologous Gene Expression in E.coli. Methods in Molecular Biology, vol 1586. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6887-9_6
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DOI: https://doi.org/10.1007/978-1-4939-6887-9_6
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