Abstract
Metacaspases are cysteine peptidases found in trypanosomes but absent in mammals, and despite being distantly related to the mammalian caspases they show significant disparity in their cellular and enzymatic functions. The genome of the parasitic protozoa Trypanosoma brucei (the causative agent of African sleeping sickness) encodes five metacaspases: TbMCA1-TbMCA5. Of these TbMCA2, TbMCA3, and TbMCA5 are active cysteine peptidases expressed in the bloodstream form of the parasite. To investigate the structure–function relationship of the trypanosome metacaspases and the structural basis for their divergence from the caspases, paracaspases, and other Clan CD cysteine peptidases (or vice versa), we purified and characterized TbMCA2 and determined the three-dimensional structure of an inactive mutant using X-ray crystallography. The methods presented in this chapter describe the recombinant expression of active TbMCA2 and inactive TbMCA2C213A. The protocols produce large amounts of recombinant protein for use in structural, biochemical, and kinetic studies and include detailed information on how to produce diffraction quality crystals of TbMCA2C213A.
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References
Coll NS, Vercammen D, Smidler A, Clover C, Van Breusegem F, Dangl JL, Epple P (2010) Arabidopsis type I metacaspases control cell death. Science 330:1393–1397
Proto WR, Coombs GH, Mottram JC (2012) Cell death in parasitic protozoa: regulated or incidental? Nat Rev Microbiol 11:58–66
Castanys-Muñoz E, Brown E, Coombs GH, Mottram JC (2012) Leishmania mexicana metacaspase is a negative regulator of amastigote proliferation in mammalian cells. Cell Death Dis 3:e385
Proto WR, Castanys-Munoz E, Black A, Tetley L, Moss CX, Juliano L, Coombs GH, Mottram JC (2011) Trypanosoma brucei metacaspase 4 is a pseudopeptidase and a virulence factor. J Biol Chem 286:39914–39925
Lee REC, Brunette S, Puente LG, Megeney LA (2010) Metacaspase Yca1 is required for clearance of insoluble protein aggregates. Proc Natl Acad Sci USA 107:13348–13353
Tsiatsiani L, Van Breusegem F, Gallois P, Zavialov A, Lam E, Bozhkov PV (2011) Metacaspases. Cell Death Differ 18: 1279–1288
MacKenzie SH, Clark AC (2012) Death by caspase dimerization. Adv Exp Med Biol 747:55–73
Fuentes-Prior P, Salvesen GS (2004) The protein structures that shape caspase activity, specificity, activation and inhibition. Biochem J 384:201–232
Pop C, Salvesen GS (2009) Human caspases: activation, specificity, and regulation. J Biol Chem 284:21777–21781
Moss CX, Westrop GD, Juliano L, Coombs GH, Mottram JC (2007) Metacaspase 2 of Trypanosoma brucei is a calcium-dependent cysteine peptidase active without processing. FEBS Lett 581:5635–5639
Watanabe N, Lam E (2011) Calcium-dependent activation and autolysis of Arabidopsis metacaspase 2d. J Biol Chem 286(12):10027–10040
Watanabe N, Lam E (2005) Two Arabidopsis metacaspases AtMCP1b and AtMCP2b are arginine/lysine-specific cysteine proteases and activate apoptosis-like cell death in yeast. J Biol Chem 280:14691–14699
Vercammen D, van de Cotte B, De Jaeger G, Eeckhout D, Casteels P, Vandepoele K, Vandenberghe I, Van Beeumen J, Inzé D, Van Breusegem F (2004) Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine. J Biol Chem 279:45329–45336
Mottram JC, Helms MJ, Coombs GH, Sajid M (2003) Clan CD cysteine peptidases of parasitic protozoa. Trends Parasitol 19:182–187
Helms MJ, Ambit A, Appleton P, Tetley L, Coombs GH, Mottram JC (2006) Bloodstream form Trypanosoma brucei depend upon multiple metacaspases associated with RAB11-positive endosomes. J Cell Sci 119: 1105–1117
Rawlings ND, Barrett AJ, Bateman A (2012) MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res 40:D343–D350
McLuskey K, Rudolf J, Proto WR, Isaacs NW, Coombs GH, Moss CX, Mottram JC (2012) Crystal structure of a Trypanosoma brucei metacaspase. Proc Natl Acad Sci USA 109:7469–7474
Vercammen D, Belenghi B, van de Cotte B, Beunens T, Gavigan J-A, De Rycke R, Brackenier A, Inzé D, Harris JL, Van Breusegem F (2006) Serpin1 of Arabidopsis thaliana is a suicide inhibitor for metacaspase 9. J Mol Biol 364:625–636
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235–242
Martin B (1979) Lanthanides as probes for calcium in biological systems. Q Rev Biophys 12(2):181–209
Wilkins MR, Gasteiger E, Bairoch A, Sanchez JC, Williams KL, Appel RD, Hochstrasser DF (1999) Protein identification and analysis tools in the ExPASy server. Methods Mol Biol 112: 531–552
Acknowledgements
This work was supported by Wellcome Trust Grant 091790 and Medical Research Council Grant 0700127. The Wellcome Trust Centre for Molecular Parasitology is supported by core funding from Wellcome Trust Grant 085349.
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McLuskey, K., Moss, C.X., Mottram, J.C. (2014). Purification, Characterization, and Crystallization of Trypanosoma Metacaspases. In: V. Bozhkov, P., Salvesen, G. (eds) Caspases,Paracaspases, and Metacaspases. Methods in Molecular Biology, vol 1133. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-0357-3_13
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DOI: https://doi.org/10.1007/978-1-4939-0357-3_13
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