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Ribonucleases A and T1 Comparable Mechanisms of RNA Cleavage with Different Active Site Geometries

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Crystallography in Molecular Biology

Part of the book series: NATO ASI Series ((NSSA,volume 126))

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Abstract

There are a variety of enzymes which cleave the phosphodiester link in ribo- and deoxyribonucleic acids. They exhibit different catalytic activities, different mechanisms of cleavage, and different three-dimensional structures. The best known examples are DNase I which acts upon single and double stranded DNA , staphylococcal nuclease which cleaves P-0 bonds in RNA and DNA single strands2 , and the two RNases A and T1 which cut at the 3′-end of pyrimidine and guanosine nucleotides respectively3-5 . Although the two RNases have different molecular topology, the mechanism of hydrolysis is similar and suggestive of a comparable active site geometry. Since high resolution crystal structures are available (1.5Å for RNase A and 2.oÅ for RNase T1)3-5, a study of the arrangement of the functional amino acids in the1 active sites of the two enzymes is of interest.

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References

  1. D. Suck, C. Oefner, and W. Kabsch, Three-dimensional structure of bovine pancreatic DNase I at 2.5 A resolution, EMBO J. 3:2423–2430 (1984).

    PubMed  CAS  Google Scholar 

  2. F .A. Cotton, E.A. Hazen, and M.J. Legg, Staphylococcal nuclease: Proposed mechanism of action based on structure of enzyme-thymidine 3’,5’-bisphosphate-calcium ion complex at 1.5 Å-resolution, Proc. Natl. Acad. Sci. (USA) 76:2551–2555 (1979).

    Article  CAS  Google Scholar 

  3. A. Wlodawer, Structure of bovine pancreatic ribonuclease by X-ray and neutron diffraction, pp. 393–439, in “Biological Macromolecules and Assemblies, Vol. II. Nucleic Acids and Interactive Proteins”, F.A. Jurnak and A. McPherson, eds., John Wiley & Sons, New York (1985) .

    Google Scholar 

  4. U. Heinemann and W. Saenger, Specific protein-nucleic acid recognition in ribonuclease T1 -2’-guanylic acid complex: an X-ray study, Nature 299:27–31 (1982).

    Article  PubMed  CAS  Google Scholar 

  5. R. Arni, Ph.D. Thesis Freie Universität Berlin, to be submitted (1986).

    Google Scholar 

  6. S.Y. Wodak, M.Y. Liu, and H.W. Wyckoff, The structure of cytidylyl(2’-5’)adenosine when bound to pancreatic ribonuclease S J. Mol. Biol. 116:855–875 (1977).

    Article  CAS  Google Scholar 

  7. U. Heinemann and W. Saenger, Mechanism of guanosine recognition and RNA hydrolysis by ribonuclease T1 , Pure &Appl. Chem. 57:417–422 (1985).

    Article  CAS  Google Scholar 

  8. F. Eckstein, Nucleoside phosphothioates, Ann. Rev. Biochem.54:367–402 (1985).

    Article  PubMed  CAS  Google Scholar 

  9. K. Takahashi, The structure and function of ribonuclease T1 . XXI. Modification of histidine residues in ribonuclease T1 with iodoacetamide, J. Biochem. (Tokyo) 80:1267–1275 (1976).

    CAS  Google Scholar 

  10. R. Fülling and H. Rüterjans, Proton magnetic resonance studies of ribonuclease T1 . Assignment of histidine-27 C2-H and C5-H proton resonances by a photooxidation reaction, FEBS Lett. 88:279–282 (1978).

    Article  PubMed  Google Scholar 

  11. F. Egami, T. Oshima, and T. Uchida, Specific interactions of base-specific nucleases with nucleosides and nucleotides, Mol. Biol. Biochem. Biophys. 32:250–277 (1980).

    Article  PubMed  CAS  Google Scholar 

  12. S. Iida and T. Ooi , Titration of ribonuclease T1 , Biochemistry 8:3897–3901 (1969).

    Article  PubMed  CAS  Google Scholar 

  13. C. Hill, G. Dodson, U. Heinemann, W. Saenger, Y. Mitsui, K. Nakamura, S. Borisov, G. Tischenko, K. Polyakov and S. Pavlovsky, The structural and seguence homology of a family of microbial ribonucleases, Trends Biochem. Sci. 8:364–369 (1983).

    Article  CAS  Google Scholar 

  14. A. Pähler, A. Banerjee, J.K. Dattagupta, T. Fujiwara, K. Lindner, G.P. Pal, D. Suck, G. Weber and W. Saenger, Three-dimensional structure of fungal proteinase K reveals similarity to bacterial subtilisin, EMBO J. 3:1311–1314 (1984).

    PubMed  Google Scholar 

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Saenger, W., Arni, R., Maslowska, M., Pähler, A., Heinemann, U. (1987). Ribonucleases A and T1 Comparable Mechanisms of RNA Cleavage with Different Active Site Geometries. In: Moras, D., Drenth, J., Strandberg, B., Suck, D., Wilson, K. (eds) Crystallography in Molecular Biology. NATO ASI Series, vol 126. Springer, Boston, MA. https://doi.org/10.1007/978-1-4684-5272-3_29

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  • DOI: https://doi.org/10.1007/978-1-4684-5272-3_29

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4684-5274-7

  • Online ISBN: 978-1-4684-5272-3

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