Skip to main content
SpringerLink
Log in

Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming

  • Original Article
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

Complete genome sequences were obtained from two isolates of the carlavirus nerine latent virus from hippeastrum and narcissus plants, two isolates of the potyvirus hippeastrum mosaic virus from a hippeastrum plant, and one isolate each of the potyviruses narcissus degeneration virus, narcissus yellow stripe virus and Vallota speciosa virus from narcissus plants. Proposals are made to clarify the current confusion surrounding the naming of some of these viruses.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1

Similar content being viewed by others

References

  1. Adams MJ, Antinow JF, Bar-Joseph M, Brunt AA, Candresse T, Foster GD, Martelli GP, Milne RG, Fauquet CM (2004) The new plant family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149:1045–1060

    PubMed  CAS  Google Scholar 

  2. Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479

    Article  PubMed  CAS  Google Scholar 

  3. Alexandre MAV, Duarte LML, Rivas EB, Cilli A, Harakava R, Galleti SR, Kitajima EW (2011) Hippeastrum mosaic virus diagnosed in hippeastrum and eucharis in Brazil. J Plant Pathol 93:643–649

    Google Scholar 

  4. Brunt AA, Atkey PT (1967) Rapid detection of narcissus yellow stripe and two other filamentous viruses in crude negatively stained narcissus sap. Rep Glasshouse Res Inst 1966:155–159

    Google Scholar 

  5. Brunt AA (1995) Narcissus. In: Loebenstein G, Lawson RH, Brunt AA (eds) Virus and virus-like diseases of bulb and flower crops. Wiley, Chichester, pp 322–334

  6. Chen J, Chen JP, Langeveld SA, Derks AFLM, Adams MJ (2003) Molecular characterization of carla- and potyviruses from narcissus in China. J Phytopathol 151:1–4

    Article  Google Scholar 

  7. Chen J, Shi YH, Lu YW, Adams MJ, Chen JP (2006) Narcissus symptomless virus: a new carlavirus of daffodils. Arch Virol 151:2261–2267

    Article  PubMed  CAS  Google Scholar 

  8. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2011) Geneious Pro v5.5.6. http://www.geneious.com

  9. Hakkaart FA (1972) Virusziekten van Nerine. Jversl Inst Plziektenk Onderz, Wageningen 1971:105–106

    Google Scholar 

  10. Langeveld SA, Derks AFLM, Konicheva V, Muñoz D, Zhin-nan C, Denkova ST, Lemmers MEC, Boonekamp PM (1997) Molecular identification of potyviruses in Dutch stocks of Narcissus. Acta Hort 430:641–648

    CAS  Google Scholar 

  11. Maat DZ, Huttinga H, Hakkaart FA (1978) Nerine latent virus, some properties and serological detectability in Nerine bowdenii. Neth J Plant Pathol 84:47–59

    Article  Google Scholar 

  12. Morschel JR (1966). Recorded plant diseases in and outside Australia. Part 4: Forest trees and Ornamental Plants. Commonwealth Department of Health Division of Plant Quarantine, Canberra, 79 p

  13. Pearson MN, Cohen D, Cowell SJ, Jones D, Blouin A, Lebas BSM, Shiller JB, Clover GRC (2009) A survey of viruses of flower bulbs in New Zealand. Australas Plant Pathol 38:305–309

    Article  Google Scholar 

  14. Raj SK, Snehi SK, Kumar S, Khan MS (2009) First molecular detection and identification of a potyvirus associated with severe mosaic disease of amaryllis (Hippeastrum hybridum Hort.) in India. Australas Plant Dis Note 4:50–53

    CAS  Google Scholar 

  15. Roossinck MJ, Saha P, Wiley GB, Quan J, White JD, Lai H, Chavarría F, Shen G, Roe BA (2010) Ecogenomics: using massively parallel pyrosequencing to understand virus ecology. Mol Ecol 19(Suppl 1):81–88

    Article  PubMed  Google Scholar 

  16. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi:10.1093/molbev/msr121

    Google Scholar 

  17. Valli A, Lo′pez-Moya JJ, Garcı′a JA (2007) Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae. J Gen Virol 88:1016–1028

    Article  PubMed  CAS  Google Scholar 

  18. Ward LI, Veerakone S, Tang J, Clover GRG (2009) First report of narcissus degeneration virus, narcissus late season yellows virus, and narcissus symptomless virus on Narcissus in New Zealand. Plant Dis 93:964

    Article  Google Scholar 

  19. Wylie SJ, Nouri S, Coutts BA, Jones MGK (2010) Narcissus late season yellows virus and Vallota speciosa virus found infecting domestic and wild populations of Narcissus species in Australia. Arch Virol 155:1171–1174

    Article  PubMed  CAS  Google Scholar 

  20. Wylie SJ, Luo H, Li H, Jones MGK (2012) Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples. Arch Virol 157:271–284

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This study was funded by Australian Research Council Linkage Grant LP110200180.

Author information

Authors and Affiliations

  1. Plant Virology Group, Western Australian State Agricultural Biotechnology Centre, School of Biological Sciences and Biotechnology, Murdoch University, Perth, WA, 6150, Australia

    Stephen J. Wylie & Michael G. K. Jones

Authors
  1. Stephen J. Wylie
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Michael G. K. Jones
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Stephen J. Wylie.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 38 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wylie, S.J., Jones, M.G.K. Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming. Arch Virol 157, 1471–1480 (2012). https://doi.org/10.1007/s00705-012-1319-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-012-1319-6

Keywords

Search

Navigation