Skip to main content
Log in

Synthesis, molecular properties and DFT studies of new phosphoramidates as potential urease inhibitors

  • Original Research
  • Published:
Medicinal Chemistry Research Aims and scope Submit manuscript

Abstract

In this work, new phosphoramidates were prepared and screened for their putative urease inhibitory activity. The importance of this class of compounds is related to the wide range of biological activities which they exhibit. Consequently, higher activity shown by phosphoramidates 3a, 4b, 5a, 5b, 5c, and 9a suggests that they could serve as lead substances for the development of novel synthetic compounds with enhanced inhibitory ureolitic activity. Their predicted ADMET properties are also in accordance with the general requirements for drug-like compounds. Structure–activity relationship analyses suggest that the presence of cyclohexylamine group is an important structural feature associated with enhanced activities. DFT calculations were performed to obtain the energy values of HOMO and LUMO, and dipole moment.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Scheme 1
Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Alafeefy AM, Alqasoumi SI, Ashour AE, Masand V, Al-Jaber NA, Ben Hadda T, Mohamed MA (2012) Quinazoline-tyrphostin as a new class of antitumor agents, molecular properties prediction, synthesis and biological testing. Eur J Med Chem 53:133–140

    Article  CAS  PubMed  Google Scholar 

  • Amtul Z, Rahman AU, Siddiqui RA, Choudhary MI (2002) Chemistry and mechanism of urease inhibition. Curr Med Chem 9:1323–1348

    Article  CAS  PubMed  Google Scholar 

  • Arantes FFP, Barbosa LCA, Maltha CRA, Demuner AJ, Fidêncio PH, Carneiro JWM (2011) A quantum chemical and chemometric study of sesquiterpene lactones with cytotoxicity against tumor cells. J Chemom 25:401–407

    CAS  Google Scholar 

  • Becke AD (1993) Density-functional thermochemistry. III. The role of exact exchange. J Chem Phys 98:5648–5652

    Article  CAS  Google Scholar 

  • Borrello L, Chiacchio U, Corsaro A, Pistarà V, Iannazzo D (2009) Phosphoroamidate derivatives of N, O-nucleosides as inhibitors of reverse transcriptase. Arkivoc 2009:112–124

    Google Scholar 

  • Correa-Basurto J, Flores-Sandoval C, Marin-Cruz J, Rojo-Dominguez A, Espinoza-Fonseca LM, Trujillo-Ferrara JG (2007) Docking and quantum mechanic studies on cholinesterases and their inhibitors. Eur J Med Chem 42:10–19

    Article  CAS  PubMed  Google Scholar 

  • Cramer F, Hennrich N, Imidoester V (1961) Die Umlagerung von Trichloracetimidaten zu N-substituierten Säureamiden. Chem Ber 94:976–989

    Article  CAS  Google Scholar 

  • de Oliveira DB, Gaudio AC (2001) BuildQSAR: a new computer program for QSAR analysis. Quant Struct Act Relat 19:599–601

    Article  Google Scholar 

  • Derudas M, Carta D, Brancale A, Vanpouille C, Lisco A, Margolis L, Balzarini J, McGuigan C (2009) The application of phosphoramidate protide technology to acyclovir confers anti-HIV inhibition. J Med Chem 52:5520–5530

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Derudas M, Brancale A, Naesens L, Neyts J, Balzarini J, McGuigan C (2010) Application of the phosphoramidate ProTide approach to the antiviral drug ribavirin. Bioorg Med Chem 18:2748–2755

    Article  CAS  PubMed  Google Scholar 

  • Donghi M, Attenni B, Gardelli C, Marco AD, Fiore F, Giuliano C, Laufer R, Leone JF, Pucci V, Rowley M, Narjes F (2009) Synthesis and evaluation of novel phosphoramidate prodrugs of 2′-methyl cytidine as inhibitors of hepatitis C virus NS5B polymerase. Bioorg Med Chem Lett 19:1392–1395

    Article  CAS  PubMed  Google Scholar 

  • Duckworth MJ, Okoli AS, Mendz GL (2009) Novel Helicobacter pylori therapeutic targets: the unusual suspects. Expert Rev Anti Infect Ther 7:835–867

    Article  CAS  PubMed  Google Scholar 

  • Ertl P, Rohde B, Selzer P (2000) Fast calculation of molecular polar surface area as a sum of fragment-based contributions and its application to the prediction of drug transport properties. J Med Chem 43:3714–3717

    Article  CAS  PubMed  Google Scholar 

  • Follmer C (2010) Ureases as a target for the treatment of gastric and urinary infections. J Clin Pathol 63:424–430

    Article  CAS  PubMed  Google Scholar 

  • Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA, Jr., Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas Ö, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) Gaussian ‘09, Revision A.1. ‘09, Wallingford CT

  • Harris SA, McGuigan C, Andrei G, Snoeck R, De Clercq E, Balzarini J (2001) Synthesis and antiviral evaluation of phosphoramidate derivatives of (E)-5-(2-bromovinyl)-2′-deoxyuridine. Antivir Chem Chemother 12:293–300

    Article  CAS  PubMed  Google Scholar 

  • Hehre W, Ohlinger S (2010) Spartan’10 Tutorial and user’s guide. ’10, Wavefunction Inc

  • Kašpárek F, Mollin J (1980) Solvolysis of diphenyl amidophosphates in aqueous alcoholic media. Collect Czech Chem Commun 52:1115–1130

    Google Scholar 

  • Krajewska B (2009) Ureases I. Functional, catalytic and kinetic properties: a review. J Mol Catal B Enzym 59:9–21

    Article  CAS  Google Scholar 

  • Krishnan P, Sundaram S, Venkatasubramanian N (1985) Alkaline hydrolysis of arylesters of diphenylphosphorodiamidates—evidence consistent with an elimination—addition mechanism. Proc Indian Acad Sci Chem Sci 94:467–473

    CAS  Google Scholar 

  • Li HQ, Xiao ZP, Yin L, Yan T, Lv PC, Zhu HL (2009) Amines and oximes derived from deoxybenzoins as Helicobacter pylori urease inhibitors. Eur J Med Chem 44:2246–2251

    Article  CAS  PubMed  Google Scholar 

  • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (1997) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliver Rev 23:3–25

    Article  CAS  Google Scholar 

  • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46:3–26

    Article  CAS  PubMed  Google Scholar 

  • Maalej E, Chabchoub F, Samadi A, de Los Ríos C, Perona A, Morreale A, Marco-Contelles J (2011) Synthesis, biological assessment and molecular modeling of 14-aryl-10,11,12,14-tetrahydro-9H-benzo[5,6]chromeno[2,3-b]quinolin-13-amines. Bioorg Med Chem Lett 21:2384–2388

    Article  CAS  PubMed  Google Scholar 

  • Mangal M, Sagar P, Singh H, Raghava GP, Agarwal SM (2013) NPACT: naturally occurring plant-based anti-cancer compound-activity-target database. Nucleic Acids Res 41:D1124–D1129

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Mara C, Dempsey E, Bell A, Barlow JW (2011) Synthesis and evaluation of phosphoramidate and phosphorothioamidate analogues of amiprophos methyl as potential antimalarial agents. Bioorg Med Chem Lett 21:6180–6183

    Article  CAS  PubMed  Google Scholar 

  • Marenich AV, Cramer CJ, Truhlar DG (2009) Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions. J Phys Chem B 113:6378–6396

    Article  CAS  PubMed  Google Scholar 

  • McGuigan C, Kelleher MR, Perrone P, Mulready S, Luoni G, Daverio F, Rajyaguru S, Pogam SL, Najera I, Martin JA, Klumpp K, Smith DB (2009) The application of phosphoramidate ProTide technology to the potent anti-HCV compound 4′-azidocytidine (R1479). Bioorg Med Chem Lett 19:4250–4254

    Article  CAS  PubMed  Google Scholar 

  • Mehellou Y, Balzarini J, McGuigan C (2009) An investigation into the anti-HIV activity of 2′,3′-didehydro-2′,3′-dideoxyuridine (d4U) and 2′,3′-dideoxyuridine (ddU) phosphoramidate ‘ProTide’ derivatives. Org Biomol Chem 7:2548–2553

    Article  CAS  PubMed  Google Scholar 

  • Oliveira FM, Barbosa LCA, Teixeira RR, Demuner AJ, Maltha CRA, Picanço MC, Silva GA, Paula VF (2012a) Synthesis and insecticidal activity of new phosphoramidates. J Pestic Sci 37:85–88

    Article  CAS  Google Scholar 

  • Oliveira FM, Barbosa LCA, Valente VMM, Demuner AJ, Maltha CRA, Oliveros-Bastidas AJ (2012b) Structure–activity relationship of pyridin-2(1H)-ones derivatives as urease inhibitors. J Pharm Res 5:5326–5333

    CAS  Google Scholar 

  • Paula VF, Barbosa LCA, Teixeira RR, Picanco MC, Silva GA (2008) Synthesis and insecticidal activity of new 3-benzylfuran-2-yl N, N, N′, N′-tetraethyldiamidophosphate derivatives. Pest Manag Sci 64:863–872

    Article  CAS  PubMed  Google Scholar 

  • Proudfoot JR (2002) Drugs, leads, and drug-likeness: an analysis of some recently launched drugs. Bioorg Med Chem Lett 12:1647–1650

    Article  CAS  PubMed  Google Scholar 

  • Roberts BP, Miller BR 3rd, Roitberg AE, Merz KM Jr (2012) Wide-open flaps are key to urease activity. J Am Chem Soc 134:9934–9937

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Roubinek F, Bedrník P, Cech M, Daněk J, Buděšínský Z (1980) Diphenylesters of amidophosphoric acids, their synthesis, determination of phosphorus and biological activity. Cesk Farm 29:90–94

    CAS  PubMed  Google Scholar 

  • Ruveda MA, Zerba EN, Podesta R, de Licastro SA (1975) Organophosphorus chemistry—V: thermal transformation of the cyclohexylammonium salt of O-aryl N-cyclohexyl phosphoramidic acids into sym-pyrophosphates. Tetrahedron 31:885–890

    Article  CAS  Google Scholar 

  • Tambunan US, Bramantya N, Parikesit AA (2011) In silico modification of suberoylanilide hydroxamic acid (SAHA) as potential inhibitor for class II histone deacetylase (HDAC). BMC Bioinf 12(Suppl 13):S23

    Article  CAS  Google Scholar 

  • Teixeira RR, Bressan GC, Pereira WL, Ferreira JG, Oliveira FM, Thomaz DC (2013) Synthesis and antiproliferative activity of C-3 functionalized isobenzofuran-1(3H)-ones. Molecules 18:1881–1896

    Article  CAS  PubMed  Google Scholar 

  • Tetko IV (2005) Computing chemistry on the web. Drug Discov Today 10:1497–1500

    Article  PubMed  Google Scholar 

  • Uckun FM, Venkatachalam TK, Erbeck D, Chen CL, Petkevich AS, Vassilev A (2005) Zidampidine, an aryl phosphate derivative of AZT: in vivo pharmacokinetics, metabolism, toxicity, and anti-viral efficacy against hemorrhagic fever caused by Lassa virus. Bioorg Med Chem 13:3279–3288

    Article  CAS  PubMed  Google Scholar 

  • Vassiliou S, Grabowiecka A, Kosikowska P, Yiotakis A, Kafarski P, Berlicki L (2008) Design, synthesis, and evaluation of novel organophosphorus inhibitors of bacterial ureases. J Med Chem 51:5736–5744

    Article  CAS  PubMed  Google Scholar 

  • Veber DF, Johnson SR, Cheng HY, Smith BR, Ward KW, Kopple KD (2002) Molecular properties that influence the oral bioavailability of drug candidates. J Med Chem 45:2615–2623

    Article  CAS  PubMed  Google Scholar 

  • Weatherburn MW (1967) Phenol-hypochlorite reaction for determination of ammonia. Anal Chem 39:971–974

    Article  CAS  Google Scholar 

  • Zhang G, Musgrave CB (2007) Comparison of DFT methods for molecular orbital eigenvalue calculations. J Phys Chem A 111:1554–1561

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

We are grateful to the following Brazilian agencies: Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) for research fellowships (AJD, CRAM, LCAB), Fundação de Amparo à Pesquisa de Minas Gerais (FAPEMIG), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and FINEP for financial support. We also thanks to Dr. Adão Sabino and Mr. Augusto Carvalho for obtaining the high resolution mass spectra.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Luiz C. A. Barbosa.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 2016 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Oliveira, F.M., Barbosa, L.C.A., Demuner, A.J. et al. Synthesis, molecular properties and DFT studies of new phosphoramidates as potential urease inhibitors. Med Chem Res 23, 5174–5187 (2014). https://doi.org/10.1007/s00044-014-1113-y

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00044-014-1113-y

Keywords

Navigation