Abstract
Nanobiodevices, a technology characterized by engineered nanostructures, have attracted extensive interest as a new generation bioanalytical tool that allows accessing the information contained in nucleic acids. Distinct properties of nanobiodevice technologies have shown great promise in improvements in sensitivity, speed, and accuracy for nucleic acid analysis, providing a cutting-edge analytical tool to facilitate the analysis of nucleic acid in biomedical applications. In this chapter, an overview of nanobiodevices and how this emergent technology can be combined with other analytical approaches for addressing different challenges in biomedical applications will be provided. The recent advances in nanobiodevice for nucleic acid analysis will be highlighted in the following categories: (i) nanobiodevice for preparation of nucleic acid and (ii) nanobiodevice for detection of nucleic acid.
References
Ajiri T, Yasui T, Maeki M, Ishida A, Tani H, Baba Y, Tokeshi M (2017) Sensors Actuators B 250:39–43
Ajiri T, Yasui T, Maeki M, Ishida A, Tani H, Nishii J, Baba Y, Tokeshi M (2020) ACS Appl Nano Mater 3:8810–8816
Alberts B (2015) Molecular biology of the cell. Garland Science, New York
Burklund A, Petryk JD, Hoopes PJ, Zhang JX (2020) Biomicrofluidics 14:034115
Cattani-Scholz A, Pedone D, Dubey M, Neppl S, Nickel B, Feulner P, Schwartz J, Abstreiter G, Tornow M (2008) ACS Nano 2:1653–1660
Christopoulos TK (1999) Anal Chem 71:425–438
Das J, Ivanov I, Montermini L, Rak J, Sargent EH, Kelley SO (2015) Nat Chem 7:569–575
Das J, Ivanov I, Sargent EH, Kelley SO (2016) J Am Chem Soc 138:11009–11016
Das J, Ivanov I, Safaei TS, Sargent EH, Kelley SO (2018) Angew Chem Int Ed Engl 57:3711–3716
Gao Z, Agarwal A, Trigg AD, Singh N, Fang C, Tung C-H, Fan Y, Buddharaju KD, Kong J (2007) Anal Chem 79:3291–3297
Hahm J-I, Lieber CM (2004) Nano Lett 4:51–54
Han Z, Peng C, Yi J, Zhang D, Xiang X, Peng X, Su B, Liu B, Shen Y, Qiao L (2021) Sensors Actuators B Chem 333:129563
He Y, Su S, Xu T, Zhong Y, Zapien JA, Li J, Fan C, Lee S-T (2011) Nano Today 6:122–130
Jalali M, AbdelFatah T, Mahshid SS, Labib M, Sudalaiyadum Perumal A, Mahshid S (2018) Small 14:1801893
Jeon S, Lee H, Bae K, Yoon KA, Lee ES, Cho Y (2016) Theranostics 6:828–836
Kang JH, Kim YT, Lee K, Kim HM, Lee KG, Ahn J, Lee J, Lee SJ, Kim KB (2020) Nanoscale 12:5048–5054
Kant K, Yoo J, Amos S, Erkelens M, Priest C, Shapter JG, Losic D (2015) RSC Adv 5:23886–23891
Kelley SO, Mirkin CA, Walt DR, Ismagilov RF, Toner M, Sargent EH (2014) Nat Nanotechnol 9:969–980
Kim J, Hong JW, Kim DP, Shin JH, Park I (2012) Lab Chip 12:2914–2921
Kim J, Rim YS, Chen H, Cao HH, Nakatsuka N, Hinton HL, Zhao C, Andrews AM, Yang Y, Weiss PS (2015) ACS Nano 9:4572–4582
Kim KH, Hwang A, Song Y, Lee WS, Moon J, Jeong J, Bae NH, Jung YM, Jung J, Ryu S (2021) ACS Nano 15:4777–4788
Kitano Y, Aoki K, Ohka F, Yamazaki S, Motomura K, Tanahashi K, Hirano M, Naganawa T, Iida M, Shiraki Y, Nishikawa T, Shimizu H, Yamaguchi J, Maeda S, Suzuki H, Wakabayashi T, Baba Y, Yasui T, Natsume A (2021) ACS Appl Mater Interfaces 13:17316–17329
Ko J, Bhagwat N, Yee SS, Ortiz N, Sahmoud A, Black T, Aiello NM, McKenzie L, O'Hara M, Redlinger C, Romeo J, Carpenter EL, Stanger BZ, Issadore D (2017) ACS Nano 11:11182–11193
Kohler C, Barekati Z, Radpour R, Zhong XY (2011) Anticancer Res 31:2623–2628
Kuo W-C, Sarangadharan I, Pulikkathodi AK, Chen P-H, Wang S-L, Wu C-R, Wang Y-L (2019) Sensors 19:1484
Lee H, Jeon S, Seo JS, Goh SH, Han JY, Cho Y (2016) Biomaterials 101:251–257
Liang LG, Kong MQ, Zhou S, Sheng YF, Wang P, Yu T, Inci F, Kuo WP, Li LJ, Demirci U, Wang S (2017) Sci Rep 7:46224
Lim J, Choi M, Lee H, Han J-Y, Cho Y (2019) Front Chem:6
Lim J, Kang B, Son HY, Mun B, Huh Y-M, Rho HW, Kang T, Moon J, Lee J-J, Seo SB (2022) Biosens Bioelectron 197:113753
Liu F, Vermesh O, Mani V, Ge TJ, Madsen SJ, Sabour A, Hsu EC, Gowrishankar G, Kanada M, Jokerst JV, Sierra RG, Chang E, Lau K, Sridhar K, Bermudez A, Pitteri SJ, Stoyanova T, Sinclair R, Nair VS, Gambhir SS, Demirci U (2017) ACS Nano 11:10712–10723
Liu L, Chen S, Xue Z, Zhang Z, Qiao X, Nie Z, Han D, Wang J, Wang T (2018) Nat Commun 9:444
Lu N, Gao A, Dai P, Song S, Fan C, Wang Y, Li T (2014) Small 10:2022–2028
Macfarlane LA, Murphy PR (2010) Curr Genomics 11:537–561
Mandel P, Metais P (1948) C R Seances Soc Biol Fil 142:241–243
McGrath J, Jimenez M, Bridle H (2014) Lab Chip 14:4139–4158
Musa M, Yasui T, Zhu Z, Nagashima K, Ono M, Liu Q, Takahashi H, Shimada T, Arima A, Yanagida T, Baba Y (2021) Anal Sci:advpub
Poudineh M, Mohamadi RM, Sage A, Mahmoudian L, Sargent EH, Kelley SO (2014) Lab Chip 14:1785–1790
Rahong S, Yasui T, Yanagida T, Nagashima K, Kanai M, Klamchuen A, Meng G, He Y, Zhuge F, Kaji N, Kawai T, Baba Y (2014) Sci Rep 4:5252–5259
Rahong S, Yasui T, Yanagida T, Nagashima K, Kanai M, Meng G, He Y, Zhuge F, Kaji N, Kawai T, Baba Y (2015a) Sci Rep 5:10584
Rahong S, Yasui T, Yanagida T, Nagashima K, Kanai M, Meng G, He Y, Zhuge F, Kaji N, Kawai T, Baba Y (2015b) Anal Sci 31:153–157
Ramshani Z, Zhang C, Richards K, Chen L, Xu G, Stiles BL, Hill R, Senapati S, Go DB, Chang H-C (2019) Commun Biol 2:1–9
Ratti M, Lampis A, Ghidini M, Salati M, Mirchev MB, Valeri N, Hahne JC (2020) Target Oncol 15:261–278
Reategui E, van der Vos KE, Lai CP, Zeinali M, Atai NA, Aldikacti B, Floyd Jr FP, Thapar HKAV, Hochberg FH, Sequist LV, Nahed BV, Toner SCBM, Balaj L, Breakefield TTDXO, Stott SL (2018) Nat Commun 9:175
Rusek AM, Abba M, Eljaszewicz A, Moniuszko M, Niklinski J, Allgayer H (2015) Mol Cancer 14:1–10
Salafi T, Zhang Y, Zhang Y (2019) Nano-Micro Letters 11:77
Shehadul Islam M, Aryasomayajula A, Selvaganapathy P (2017) Micromachines 8
Shimada T, Yasui T, Yokoyama A, Goda T, Hara M, Yanagida T, Kaji N, Kanai M, Nagashima K, Miyahara Y, Kawai T, Baba Y (2018) Lab Chip 18:3225–3229
Sina AAI, Carrascosa LG, Liang Z, Grewal YS, Wardiana A, Shiddiky MJA, Gardiner RA, Samaratunga H, Gandhi MK, Scott RJ, Korbie D, Trau M (2018) Nat Commun 9:4915
Smith JT, Wunsch BH, Dogra N, Ahsen ME, Lee K, Yadav KK, Weil R, Pereira MA, Patel JV, Duch EA, Papalia JM, Lofaro MF, Gupta M, Tewari AK, Cordon-Cardo C, Stolovitzky G, Gifford SM (2018) Lab Chip 18:3913–3925
So H, Lee K, Seo YH, Murthy N, Pisano AP (2014a) ACS Appl Mater Interfaces 6:6993–6997
So H, Lee K, Murthy N, Pisano AP (2014b) ACS Appl Mater Interfaces 6:20693–20699
Soleymani L, Fang Z, Sargent EH, Kelley SO (2009) Nat Nanotechnol 4:844–848
Su S, Wei X, Zhong Y, Guo Y, Su Y, Huang Q, Lee S-T, Fan C, He Y (2012) ACS Nano 6:2582–2590
Sun XY, Yasui T, Yanagida T, Kaji N, Rahong S, Kanai M, Nagashima K, Kawai T, Baba Y (2016) Sci Technol Adv Mater 17:644–649
Sunkara V, Kim C-J, Park J, Woo H-K, Kim D, Ha HK, Kim M-H, Son Y, Kim J-R, Cho Y-K (1851) Theranostics 2019:9
Suwatthanarak T, Thiodorus IA, Tanaka M, Shimada T, Takeshita D, Yasui T, Baba Y, Okochi M (2021) Lab Chip 21:597–607
Taller D, Richards K, Slouka Z, Senapati S, Hill R, Go DB, Chang H-C (2015) Lab Chip 15:1656–1666
Tan SC, Yiap BC (2009) J Biomed Biotechnol:2009
Takahashi H, Yasui T, Baba Y (2021a) Chem Lett 50:1244–1253
Takahashi H, Baba Y, Yasui T (2021b) Chem Commun 57:13234–13245
Takahashi H, Yasui T, Klamchuen A, Khemasiri N, Wuthikhun T, Paisrisarn P, Shinjo K, Kitano Y, Aoki K, Natsume A, Rahong S, Baba Y (2021c) Nano 11:1768
Takahashi H, Yasui T, Kashida H, Makino K, Shinjo K, Liu Q, Shimada T, Rahong S, Kaji N, Asanuma H, Baba Y (2021d) Nanotechnology 32:255301
Thomas PD, Kejariwal A (2004) Proc Natl Acad Sci 101:15398–15403
Tsougeni K, Papadakis G, Gianneli M, Grammoustianou A, Constantoudis V, Dupuy B, Petrou P, Kakabakos S, Tserepi A, Gizeli E (2016) Lab Chip 16:120–131
Veerbeek J, Steen R, Vijselaar W, Rurup WF, Korom SA, Rozzi A, Corradini R, Segerink L, Huskens J (2018) Langmuir 34:11395–11404
Vu C-A, Lai H-Y, Chang C-Y, Chan HW-H, Chen W-Y (2022) Colloids Surf B: Biointerfaces 209:112142
Wang Z, Wu HJ, Fine D, Schmulen J, Hu Y, Godin B, Zhang JX, Liu X (2013) Lab Chip 13:2879–2882
Woo HK, Sunkara V, Park J, Kim TH, Han JR, Kim CJ, Choi HI, Kim YK, Cho YK (2017) ACS Nano 11:1360–1370
Wunsch BH, Smith JT, Gifford SM, Wang C, Brink M, Bruce RL, Austin RH, Stolovitzky G, Astier Y (2016) Nat Nanotechnol 11:936–940
Xie J, Jiang X, Zhong Y, Lu Y, Wang S, Wei X, Su Y, He Y (2014) Nanoscale 6:9215–9222
Yao Q, Wang Y, Wang J, Chen S, Liu H, Jiang Z, Zhang X, Liu S, Yuan Q, Zhou X (2018) ACS Nano 12:6777–6783
Yasui T, Baba Y (2015) BUNSEKI KAGAKU 64:413–419
Yasui T, Yanagida T, Shimada T, Otsuka K, Takeuchi M, Nagashima K, Rahong S, Naito T, Takeshita D, Yonese A, Magofuku R, Zhu Z, Kaji N, Kanai M, Kawai T, Baba Y (2019) ACS Nano 13:2262–2273
Yasui T, Kaji N, Ogawa R, Hashioka S, Tokeshi M, Horiike Y, Baba Y (2011) Anal Chem 83:6635–6640
Yasui T, Ogawa K, Kaji N, Nilsson M, Ajiri T, Tokeshi M, Horiike Y, Baba Y (2016a) Sci Rep 6:31642–31649
Yasui T, Rahong S, Motoyama K, Yanagida T, Wu Q, Kaji N, Kanai M, Doi K, Nagashima K, Tokeshi M, Taniguchi M, Kawano S, Kawai T, Baba Y (2013) ACS Nano 7:3029–3035
Yasui T, Yanagida T, Ito S, Konakade Y, Takeshita D, Naganawa T, Nagashima K, Shimada T, Kaji N, Nakamura Y, Thiodorus IA, He Y, Rahong S, Kanai M, Yukawa H, Ochiya T, Kawai T, Baba Y (2017) Sci Adv 3:e1701133
Yasui T, Ogawa K, Kaji N, Nilsson M, Ajiri T, Tokeshi M, Horiike Y, Baba Y (2016b) Sci Rep 6:31642
Yeh Y-T, Zhou Y, Zou D, Liu H, Yu H, Lu H, Swaminathan V, Mao Y, Terrones M (2020) ACS Appl Mater Interfaces 12:13134–13139
Zhang Y, Tong X, Yang L, Yin R, Li Y, Zeng D, Wang X, Deng K (2021) Sensors Actuators B Chem 332:129511
Zhao C, Liu Q, Cheung KM, Liu W, Yang Q, Xu X, Man T, Weiss PS, Zhou C, Andrews AM (2020) ACS Nano 15:904–915
Zhu Z, Yasui T, Liu Q, Nagashima K, Takahashi T, Shimada T, Yanagida T, Baba Y (2021) Micromachines (Basel):12
Zhu K, Jin H, He Z, Zhu Q, Wang B (2006) Nat Protoc 1:3088–3093
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Section Editor information
Rights and permissions
Copyright information
© 2022 Springer Nature Singapore Pte Ltd.
About this entry
Cite this entry
Takahashi, H., Yasui, T., Baba, Y. (2022). Nanobiodevice for Nucleic Acid Sensing. In: Sugimoto, N. (eds) Handbook of Chemical Biology of Nucleic Acids. Springer, Singapore. https://doi.org/10.1007/978-981-16-1313-5_55-1
Download citation
DOI: https://doi.org/10.1007/978-981-16-1313-5_55-1
Received:
Accepted:
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-16-1313-5
Online ISBN: 978-981-16-1313-5
eBook Packages: Springer Reference Chemistry and Mat. ScienceReference Module Physical and Materials ScienceReference Module Chemistry, Materials and Physics