Skip to main content

Molecular Recognition: Lock-and-Key, Induced Fit, and Conformational Selection

  • Living reference work entry
  • First Online:
Encyclopedia of Biophysics
  • 40 Accesses

Definition

In the most general sense, molecular recognition is the mechanism by which two or more molecules come together to form a specific complex. These types of molecular interactions are widespread throughout biology and include diverse processes such as enzyme catalysis, antibody–antigen recognition, protein synthesis, receptor–ligand interactions, and transcriptional regulation, to name a few. Because of the universal importance of molecular recognition in biological function, understanding how molecules unambiguously recognize and interact with one another is fundamentally important to appreciating biological systems as a whole.

Introduction

Just as the field biochemistry grew out of the study of biological fermentation, much of the field of molecular recognition grew out of the study of enzyme selectivity (Voet and Voet 2004). Early studies led to the conclusion that substrates combine with enzymes at a specific location on each enzyme’s surface. These conclusions generated...

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Institutional subscriptions

References

  • Beach H, Cole R, Gill ML, Loria JP (2005) Conservation of mus-ms enzyme motions in the apo- and substrate-mimicked state. J Am Chem Soc 127(25):9167–9176

    Article  CAS  Google Scholar 

  • Csermely P, Palotai R, Nussinov R (2010) Induced fit, conformational selection and independent dynamic segments: an extended view of binding events. Trends Biochem Sci 35(10):539–546

    Article  CAS  Google Scholar 

  • Dixon M, Webb EC (1979) Enzymes. Academic, New York

    Google Scholar 

  • Fischer E (1894) The influence of configuration on enzyme activity. Dtsch Chem Ges 27:2984–2993. (Translated from German)

    Google Scholar 

  • Gerstein M, Lesk AM, Chothia C (1994) Structural mechanisms for domain movements in proteins. Biochemistry 33(22):6739–6749

    Article  CAS  Google Scholar 

  • Greives N, Zhou HX (2014) Both protein dynamics and ligand concentration can shift the binding mechanism between conformational selection and induced fit. Proc Natl Acad Sci U S A 111(28):10197–10202

    Article  CAS  Google Scholar 

  • Hammes GG, Chang YC, Oas TG (2009) Conformational selection or induced fit: a flux description of reaction mechanism. Proc Natl Acad Sci U S A 106(33):13737–13741

    Article  CAS  Google Scholar 

  • Jencks WP (1975) Binding energy, specificity, and enzymic catalysis: the circe effect. Adv Enzymol Relat Areas Mol Biol 43:219–410

    CAS  PubMed  Google Scholar 

  • Koshland DE (1958) Application of a theory of enzyme specificity to protein synthesis. Proc Natl Acad Sci U S A 44(2):98–104

    Article  CAS  Google Scholar 

  • Koshland DE Jr (2004) Crazy, but correct. Nature 432(7016):447

    Article  CAS  Google Scholar 

  • Laidler KH (1951) The influence of pressure on the rates of biological reactions. Arch Biochem 30(2):226–236

    CAS  PubMed  Google Scholar 

  • Monod J, Wyman J, Changeux JP (1965) On the nature of allosteric transitions: a plausible model. J Mol Biol 12:88–118

    Article  CAS  Google Scholar 

  • Sullivan SM, Holyoak T (2008) Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection. Proc Natl Acad Sci U S A 105(37):13829–13834

    Article  CAS  Google Scholar 

  • Tsai CJ, Kumar S, Ma B, Nussinov R (1999a) Folding funnels, binding funnels, and protein function. Protein Sci 8(6):1181–1190

    Article  CAS  Google Scholar 

  • Tsai CJ, Ma B, Nussinov R (1999b) Folding and binding cascades: shifts in energy landscapes. Proc Natl Acad Sci U S A 96(18):9970–9972

    Article  CAS  Google Scholar 

  • Voet D, Voet JG (2004) Biochemistry. Wiley, Hoboken

    Google Scholar 

  • Weikl TR, Paul F (2014) Conformational selection in protein binding and function. Protein Sci 23(11):1508–1518

    Article  CAS  Google Scholar 

  • Yang J, Gao M, Xiong JW, Su ZD, Huang YQ (2019) Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding. Protein Sci 28(11):1952–1965

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Todd Holyoak .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 European Biophysical Societies' Association (EBSA)

About this entry

Check for updates. Verify currency and authenticity via CrossMark

Cite this entry

Tran, N., Holyoak, T. (2021). Molecular Recognition: Lock-and-Key, Induced Fit, and Conformational Selection. In: Roberts, G., Watts, A. (eds) Encyclopedia of Biophysics. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-35943-9_468-1

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-35943-9_468-1

  • Received:

  • Accepted:

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-35943-9

  • Online ISBN: 978-3-642-35943-9

  • eBook Packages: Springer Reference Biomedicine and Life SciencesReference Module Biomedical and Life Sciences

Publish with us

Policies and ethics