Abstract
Carnobacteriaceae, a family of the order Lactobacillales, within the phylum Firmicutes, embraces the genera Carnobacterium, Alkalibacterium, Allofustis, Alloiococcus, Atopobacter, Atopococcus, Atopostipes, Bavariicoccus, Desemzia, Dolosigranulum, Granulicatella, Isobaculum, Jeotgalibaca, Lacticigenium, Marinilactibacillus, Pisciglobus, and Trichococcus. Circumscribed mainly on the basis of 16S rRNA gene sequence analysis and defined by a wide range of morphological and chemotaxonomic properties, such as polar lipids, fatty acids, amino acids of peptidoglycan, and whole-cell sugars which are used for the delineation of genera and species. Members of the family are mainly found associated with food products, human, and cold environmental sources.
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Abdul-Redha RJ, Prag J, Sonksen UW, Kemp M, Andresen K, Christensen JJ (2007) Granulicatella elegans bacteraemia in patients with abdominal infections. Scand J Infect Dis 39:830–833
Afzal MI, Jacquet T, Delaunay S, Borges F, Millière J-B, Revol-Junelles A-M, Cailliez-Grimal C (2010) Carnobacterium maltaromaticum: identification, isolation tools, ecology and technological aspects in dairy products. Food Microbiol 27:573–579
Aguirre M, Collins MD (1992a) Development of a polymerase chain reaction-probe test for identification of Alloiococcus otitis. J Clin Microbiol 30:2177–2180
Aguirre M, Collins MD (1992b) Phylogenetic analysis of Alloiococcus otitis gen. nov., sp. nov., an organism from human middle ear fluid. Int J Syst Bacteriol 42:79–83
Aguirre M, Morrison D, Cookson BD, Gay FW, Collins MD (1993) Phenotypic and phylogenetic characterization of some Gemella-like organisms from human infections: description of Dolosigranulum pigrum gen. nov., sp. nov. J Appl Bacteriol 75:608–612
Aguirre M, Morrison D, Cookson BD, Gay FW, Collins MD (1994) Validation of the publication of new names and new combinations previously effectively published outside the IJSB: list no. 49. Int J Syst Bacteriol 44:370–371
Albandar JM, Khattab R, Monem F, Barbuto SM, Paster BJ (2011) The subgingival microbiota of Papillon-Lefèvre syndrome. J Periodontol 83:902–908
Arar S, Vinogradov E, Shewmaker PL, Monteiro MA (2008) A polysaccharide of Alloiococcus otitidis, a new pathogen of otitis media: chemical structure and synthesis of a neoglycoconjugate thereof. Carbohydr Res 343:1079–1090
Ashhurst-Smith C, Hall ST, Walker P, Stuart J, Hansbro PM, Blackwell CC (2007) Isolation of Alloiococcus otitidis from indigenous and non-indigenous Australian children with chronic otitis media with effusion. FEMS Immunol Med Microbiol 51:163–170
Aydin E, Taştan E, Yücel M, Aydoğan F, Karakoç E, Arslan N, Kantekin Y, Demirci M (2012) Concurrent assay for four bacterial species including Alloiococcus otitidis in middle ear, nasopharynx and tonsils of children with otitis media with effusion: a preliminary report. Clin Exp Otorhinolaryngol 5:81–85
Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296
Ballerstedt H, Hantke J, Bunge M, Werner B, Gerritse J, Andreesen JR, Lechner U (2004) Properties of a trichlorodibenzo-.-dioxin-dechlorinating mixed culture with a Dehalococcoides as putative dechlorinating species. FEMS Microbiol Ecol 47:223–234
Beswick AJ, Lawley B, Fraise AP, Pahor AL, Brown NL (1999) Detection of Alloiococcus otitis in mixed bacterial populations from middle-ear effusions of patients with otitis media. Lancet 354:386–389
Bhugaloo-Vial P, Dousset X, Metivier A, Sorokine O, Anglade P, Boyaval P, Marion D (1996) Purification and amino acid sequences of piscicocins V1a and V1b, two class IIa bacteriocins secreted by Carnobacterium piscicola V1 that display significantly different levels of specific inhibitory activity. Appl Environ Microbiol 62:4410–4416
Bittar F, Richet H, Dubus J-C, Reynaud-Gaubert M, Stremler N, Sarles J, Raoult D, Rolain J-M (2008) Molecular detection of multiple emerging pathogens in sputa from cystic fibrosis patients. PLoS One 3:e2908
Bizzarro MJ, Callan DA, Farrel PA, Dembry L-M, Gallagher PG (2011) Granulicatella adiacens and early-onset sepsis in neonate. Emerg Infect Dis 17:1971–1973
Blom H, Katla T, Nissen H, Holo H (2001) Characterization, production, and purification of carnocin H, a bacteriocin produced by Carnobacterium 377. Curr Microbiol 43:227–231
Borch E, Molin G (1988) Numerical taxonomy of psychrotrophic lactic acid bacteria from prepacked meat and meat products. Antonie von Leeuwenhoek 54:301–323
Bouvet A, Grimont F, Grimont PAD (1989) Streptococcus defectivus sp. nov. and Streptococcus adjacens sp. nov., nutritionally variant streptococci from human clinical specimens. Int J Syst Bacteriol 39:290–294
Breed RS (1953) The families developed from Bacteriaceae Cohn with a description of the family Brevibacteriaceae. Riass Commun VI Congr Int Microbial Roma 1:10–15
Brouqui P, Raoult D (2001) Endocarditis due to rare and fastidious bacteria. Clin Microbiol Rev 14:177–207
Cadenas MB, Maggi RG, Diniz PPVP, Breitschwerdt KT, Sontakke S, Breithschwerdt EB (2007) Identification of bacteria from clinical samples using Bartonella alpha-proteobacteria growth medium. J Microbiol Methods 71:147–155
Cailliez-Grimal C, Chaillou S, Anba-Mondoloni J et al (2013) Complete chromosome sequence of Carnobacterium maltaromaticum LMA 28. Genome Announc 1:1–2
Cakar M, Demirbas S, Yildizoglu U, Arslan E, Balta S, Kara K, Guney M, Demirkol S, Celik T (2013) First report of endocarditis by Alloiococcus otitidis spp. in a patient with a history of chronic otitis. J Infect Public Health 6:494–495
Calo-Mata P, Arlindo S, Bochme K, de Miguel T, Pascoal A, Barros-Velazquez J (2008) Current applications and future trends of lactic acid bacteria and their bacteriocins for the biopreservation of aquatic food products. Food Bioprocess Technol 1:43–63
Camarinha-Silva A, Wos-Oxley ML, Jauregui R, Becker K, Pieper DH (2012) Validating T-RFLP as a sensitive and high-throughput approach to assess bacterial diversity patterns in human anterior nares. FEMS Microbiol Ecol 79:98–108
Cargill JS, Scott KS, Gascoyne-Binzi D, Sandoe JAT (2012) Granulicatella infection: diagnosis and management. J Med Microbiol 61:755–761
Casaburi A, Nasi A, Ferrocino I, Di Monaco R, Mauriello G, Villani F, Ercolini D (2011) Spoilage related activity of Carnobacterium maltaromaticum strains in air-stored and vacuum-packed meat. Appl Environ Microbiol 77:7382–7393
Casalta JP, Habib G, La Scola B, Drancourt M, Caus T, Raoult D (2002) Molecular diagnosis of Granulicatella elegans on the cardiac valve of a patient with culture-negative endocarditis. J Clin Microbiol 40:1845–1847
Champomier M-C, Montel M-C, Talon R (1989a) Nucleic acid relatedness studies on the genus Carnobacterium and related taxa. J Gen Microbiol 135:1391–1394
Champomier M-C, Montel M-C, Talon R (1989b) Nucleic acid relatedness studies on the genus Carnobacterium and related taxa [Erratum]. J Gen Microbiol 135:2345
Chang SH, Lee CC, Chen IC, Hsieh MR, Chen SC (2008) Infectious intracranial aneurysms caused by Granulicatella adiacens. Diagn Microbiol Infect Dis 60:201–204
Chen W, Liu F, Ling Z, Tong X, Xiang C (2012) Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer. PLoS One 7:e39743
Chmelař D, Matušek A, Korger J, Durnová E, Steffen M, Chmelařová E (2002) Isolation of Carnobacterium piscicola from human pus-case report. Folia Microbiol 47:455–457
Christensen JJ, Facklam RR (2001) Granulicatella and Abiotrophia species from human clinical specimens. J Clin Microbiol 39:3520–3523
Collins MD (2009) Genus IV. Alloiococcus. In: de Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) The Firmicutes, vol 3, 2nd edn, Bergey’s manual of systematic bacteriology. Springer, New York, pp 562–563
Collins MD, Kroppenstedt RM (1983) Lipid composition as a guide to the classification of some coryneform bacteria containing an A4α type peptidoglycan (Schleifer and Kandler). Syst Appl Microbiol 4:95–104
Collins MD, Lawson PA (2000) The genus Abiotrophia (Kawamura et al) is not monophyletic: proposal of Granulicatella gen. nov., Granulicatella adiacens comb. nov., Granulicatella elegans comb. nov. and Granulicatella balaenopterae comb. nov. Int J System Evol Microbiol 50:365–369
Collins MD, Wiernik A, Falsen E, Lawson PA (2005) Atopococcus tabaci gen. nov., sp. nov., a novel gram-positive, catalase-negative, coccus-shaped bacterium isolated from tobacco. Int J Syst Evol Microbiol 55:1693–1696
Collins MD, Farrow JAE, Phillips BA, Ferusu S, Jones D (1987) Classification of Lactobacillus divergens, Lactobacillus piscicola, and some catalase-negative, asporogenous, rod-shaped bacteria from poultry in a new genus, Carnobacterium. Int J Syst Bacteriol 37:310–316
Collins MD, Hutson RA, Foster G, Falsen E, Weiss N (2002) Isobaculum melis gen. nov., sp. nov., a Carnobacterium-like organism isolated from the intestine of a badger. Int J Syst Evol Microbiol 52:207–210
Collins MD, Higgins R, Messier S, Fortin M, Hutson RA, Lawson PA, Falsen E (2003) Allofustis seminis gen. nov., sp. nov., a novel gram-positive, catalase-negative, rod-shaped bacterium from pig semen. Int J Syst Evol Microbiol 53:811–814
Collins MD, Rodrigues U, Ash C, Aguirre M, Farrow JAE, Martinez-Murcia A, Phillips BA, Williams AM, Wallbanks S (1991) Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett 77:5–12
Cotta MA, Whitehead TR, Zeltwanger RL (2003) Isolation, characterization and comparison of bacteria from swine faeces and manure storage pits. Environ Microbiol 5:737–745
Cotta MA, Whitehead TR, Collins MD, Lawson PA (2004a) Atopostipes suicloacale gen. nov., sp. nov., isolated from an underground swine manure storage pit. Anaerobe 10:191–195
Cotta MA, Whitehead TR, Collins MD, Lawson PA (2004b) Validation of publication of new names and new combinations previously effectively published outside the IJSEM. List no. 99. Int J Syst Evol Microbiol 54:1425–1426
De Bruyn IN, Louw AI, Visser L, Holzapfel WH (1987) Lactobacillus divergens is a homofermentative organism. Syst Appl Microbiol 9:173–175
De Luca M, Amodio D, Chiurchiù S, Castelluzzo MA, Rinelli G, Bernaschi P, Calò Carducci FI, D’Argenio P (2013) Granulicatella bacteraemia in children: two cases and review of the literature. BMC Pediatr 13:61
De Man JD, Rogosa M, Sharpe ME (1960) A medium for the cultivation of Lactobacilli. J Appl Bacteriol 23:130–135
De Miguel MI, Macias AR (2008) Serous otitis media in children: implication of Alloiococcus otitidis. Otol Neurotol 29:526–530
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner ACR, Yu W-H, Lakshmanan A, Wade WG (2010) The human oral microbiome. J Bacteriol 192:5002–5017
Dewhirst FE, Klein EA, Thompson EC, Blanton JM, Chen T, Milella L, Buckley CMF, Davis IJ, Bennett M-L, Marshall-Jones ZV (2012) The canine oral microbiome. PLoS One 7:e36067
Diaz PI, Dupuy AK, Abusleme L, Reese B, Obergfell C, Choquette L, Dongari-Bagtzoglou A, Peterson DE, Terzi E, Strausbaugh LD (2012) Using high throughput sequencing to explore the biodiversity in oral bacterial communities. Mol Oral Microbiol 27:182–201
Dicks LMT, Janssen B, Dellaglio F (1995) Differentiation of Carnobacterium divergens and Carnobacterium piscicola by numerical analysis of total soluble cell protein patterns and DNA-DNA hybridizations. Curr Microbiol 31:77–79
Doyle MP, Steenson LR, Meng J (2013) Bacteria in food and beverage production. In: Rosenberg E, DeLong E, Lory S, Stackebrandt E, Thompson F (eds) The prokaryotes. Springer, Berlin, pp 241–256
Drancourt M, Roux V, Fournier PE, Raoult D (2004) rpoB gene sequence-based identification of aerobic gram-positive cocci of the genera Streptococcus, Enterococcus, Gemella, Abiotrophia, and Granulicatella. J Clin Microbiol 42:497–504
Drider D, Fimland G, Héchard Y, McMullen LM, Prévost H (2006) The continuing story of class IIa bacteriocins. Microbiol Mol Biol Rev 70:564–582
EFSA CEF Panel (EFSA Panel on Food Contact Materials, Enzymes, Flavourings and Processing Aids) (2013) Scientific opinion on the safety evaluation of a time-temperature indicator system, based on Carnobacterium maltaromaticum and acid fuchsin for use in food contact materials. EFSA J 11:3307
Elliker PR, Anderson AW, Hannesson G (1956) An agar medium for lactic acid streptococci and lactobacilli. J Dairy Sci 39:1611–1612
Faden H, Dryja D (1989) Recovery of a unique bacterial organism in human middle ear fluid and its possible role in chronic otitis media. J Clin Microbiol 27:2488–2491
Farrell JJ, Zhang L, Zhou H, Chia D, Elashoff D, Akin D, Paster BJ, Joshipura K, Wong DTW (2012) Variations of oral microbiota are associated with pancreatic diseases including pancreatic cancer. Gut 61:582–588
Feurer C, Irlinger F, Spinnler HE, Glaser P, Vallaeys T (2004) Assessment of the rind microbial diversity in a farmhouse-produced vs. a pasteurized industrially produced soft red-smear cheese using both cultivation and rDNA-based methods. J Appl Microbiol 97:546–556
Fletcher LD, McMichael JC, Russell DP, Zagursky RJ (2003) Complete genome sequence of Alloiococcus otitidis, identification of open reading frames encoding polypeptide antigens, and immunogenic compositions and their uses. Wyeth Holdings Corporation. Madison, New Jersey, p 1019
Fraise AP, Pahor AL, Beswick AJ (2001) Otitis media with effusion: the role of Alloiococcus otitidis. Ann Med 33:1–3
Frank DN, Spiegelman GB, Davis W, Wagner E, Lyons E, Pace NR (2003) Culture-independent molecular analysis of microbial constituents of the healthy human outer ear. J Clin Microbiol 41:295–303
Franzmann PD, Hoepfl P, Weiss N, Tindall BJ (1991) Psychrotrophic, lactic acid-producing bacteria from anoxic waters in Ace Lake, Antarctica; Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov. Arch Microbiol 156:255–262
Franzmann PD, Höpfl P, Weiss N, Tindall BJ (1993) Validation of the publication of new names and new combinations previously effectively published outside the IJSB: list no. 44. Int J Syst Bacteriol 43:188–189
Frenkel A, Hirsch W (1961) Spontaneous development of . form of streptococci requiring secretions of other bacteria or sulphydryl compounds for normal growth. Nature 191:728–730
Gardenier JC, Hranjec T, Sawyer RG, Bonatti H (2011) Granulicatella adiacens bacteremia in an elderly trauma patient. Surg Infect (Larchmt) 12:251–253
Garibyan V, Shaw D (2013) Bivalvular endocarditis due to Granulicatella adiacens. Am J Case Rep 14:435–438
Gensheimer WG, Reddy SY, Mulconry M, Greves C (2010) Abiotrophia/Granulicatella tubo-ovarian abscess in an adolescent virginal female. J Pediatr Adolesc Gynecol 23:e9–e12
Ghanbari M, Jami M (2013) Lactic acid bacteria and their bacteriocins: a promising approach to seafood biopreservation. In: Kongo M (ed) Lactic acid bacteria - R & D for food, health and livestock purposes. pp 381–404. InTech, Rijeka, Croatia, doi:10.5772/50705
Gillis M, De LJ, De CM (1970) The determination of molecular weight of bacterial genome DNA from renaturation rates. Eur J Biochem 12:143–153
Gori K, Ryssel M, Arneborg N, Jespersen L (2013) Isolation and identification of the microbiota of Danish farmhouse and industrially produced surface-ripened cheeses. Microb Ecol 65:602–615
Gross EL, Beall CJ, Kutsch SR, Firestone ND, Leys EJ, Griffen AL (2012) Beyond Streptococcus mutans: dental caries onset linked to multiple species by 16S rRNA community analysis. PLoS One 7:e47722
Groth I, Schumann P, Weiss N, Martin K, Rainey FA (1996) Agrococcus jenensis gen nov, sp nov, a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239
Hall GS, Gordon S, Schroeder S, Smith K, Anthony K, Procop GW (2001) Case of synovitis potentially caused by Dolosigranulum pigrum. J Clin Microbiol 39:1202–1203
Hammes WP, Hertel C (2006) The genera Lactobacillus and Carnobacterium. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E (eds) The prokaryotes. Springer, New York, pp 320–403
Hammes WP, Hertel C (2009) Genus I. Carnobacterium. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) The Firmicutes, vol 3, Bergey’s manual of systematic bacteriology. Springer, New York, pp 549–557
Hammes WP, Weiss N, Holzapfe W (2002) The genera Lactobacillus and Carnobacterium. In: Balows A, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes: a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. Springer-Verlag, New York, pp 1535–1594
Harimaya A, Takada R, Himi T, Yokota S, Fujii N (2007) Evidence of local antibody response against Alloiococcus otitidis in the middle ear cavity of children with otitis media. FEMS Immunol Med Microbiol 49:41–45
Hashimoto K, Bari MK, Omatsu Y, Kawamoto S, Shima J (2011) Biopreservation of kamaboko (steamed surimi) using piscicolin KH1 produced by Carnobacterium maltalomaticum KH1. Jpn J Food Microbiol 28:193–200
Heath CH, Bowen SF, McCarthy JS, Dwyer B (1998) Vertebral osteomyelitis and discitis associated with Abiotrophia adiacens (nutritionally variant Streptococcus) infection. Aust N Z J Med 28:663
Hendolin PH, Paulin L, Ylikoski J (2000) Clinically applicable multiplex PCR for four middle ear pathogens. J Clin Microbiol 38:125–132
Hendolin PH, Kärkkäinen U, Himi T, Markkanen A, Ylikoski J (1999) High incidence of Alloiococcus otitis in otitis media with effusion. Pediatr Infect Dis J 18:860–865
Hepburn MJ, Fraser SL, Rennie TA, Singleton CM, Delgado B Jr (2003) Septic arthritis caused by Granulicatella adiacens: diagnosis by inoculation of synovial fluid into blood culture bottles. Rheumatol Int 23:255–257
Herbin S, Mathieu F, Brulé F, Branlant C, Lefebvre G, Lebrihi A (1997) Characteristics and genetic determinants of bacteriocin activities produced by Carnobacterium piscicola CP5 isolated from cheese. Curr Microbiol 35:319–326
Hespell RB, Wolf R, Bothast RJ (1987) Fermentation of xylans by Butyrivibrio fibrisolvens and other ruminal bacteria. Appl Environ Microbiol 53:2849–2853
Hiu SF, Holt RA, Sriranganathan N, Seidler RJ, Fryer JL (1984) Lactobacillus piscicola, a new species from salmonid fish. Int J Syst Bacteriol 34:393–400
Hoedemaekers A, Schulin T, Tonk B, Melchers WJG, Sturm PDJ (2006) Ventilator-associated pneumonia caused by Dolosigranulum pigrum. J Clin Microbiol 44:3461–3462
Hoenigl M, Grisold AJ, Valentin T, Leitner E, Zarfel G, Renner H, Krause R (2010) Isolation of Carnobacterium sp. from a human blood culture. J Med Microbiol 59:493–495
Hogg JC, Lehane MJ (1999) Identification of bacterial species associated with the sheep scab mite (Psoroptes ovis) by using amplified genes coding for 16S rRNA. Appl Environ Microbiol 65:4227–4229
Holck A, Axelsson L, Schillinger U (1994) Purification and cloning of piscicolin 61, a bacteriocin from Carnobacterium piscicola LV61. Curr Microbiol 29:63–68
Holck A, Axelsson L, Schillinger U (1996) Divergicin 750, a novel bacteriocin produced by Carnobacterium divergens 750. FEMS Microbiol Lett 136:163–168
Holley RA, Guan TY, Peirson M, Yost CK (2002) Carnobacterium viridans sp. nov., an alkaliphilic, facultative anaerobe isolated from refrigerated, vacuum-packed bologna sausage. Int J Syst Evol Microbiol 52:1881–1885
Holzapfel WH, Gerber ES (1983) Lactobacillus divergens sp. nov., a new heterofermentative Lactobacillus species producing L(+)-Lactate. Syst Appl Microbiol 4:522–534
Horvath P, Coûté-Monvoisin A-C, Romero DA, Boyaval P, Fremaux C, Barrangou R (2009) Comparative analysis of CRISPR loci in lactic acid bacteria genomes. Int J Food Microbiol 131:62–70
Hsiao WWL, Li KL, Liu Z, Jones C, Fraser-Liggett CM, Fouad AF (2012) Microbial transformation from normal oral microbiota to acute endodontic infections. BMC Genomics 13:345–359
Hung W-C, Tseng S-P, Chen H-J, Tsai J-C, Chang C-H, Lee T-F, Hsueh P-R, Teng L-J (2010) Use of groESL as a target for identification of Abiotrophia, Granulicatella, and Gemella species. J Clin Microbiol 48:3532–3538
Hungate RE (1969) Roll tube method for cultivation of strict anaerobes. In: Norris JR (ed) Methods in microbiology, vol 3b. Academic, London, pp 117–132
Iino T, K-i S, Harayama S (2009) Lacticigenium naphtae gen. nov., sp. nov., a halotolerant and motile lactic acid bacterium isolated from crude oil. Int J Syst Evol Microbiol 59:775–780
Inagaki F, Suzuki M, Takai K, Oida H, Sakamoto T, Aoki K, Nealson KH, Horikoshi K (2003) Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl Environ Microbiol 69:7224–7235
Ishikawa M, Nakajima K, Yanagi M, Yamamoto Y, Yamasato K (2003) Marinilactibacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan. Int J Syst Evol Microbiol 53:711–720
Ishikawa M, Yamasato K, Kodama K, Yasuda H, Matsuyama M, Okamoto-Kainuma A, Koizumi Y (2013) Alkalibacterium gilvum sp. nov., slightly halophilic and alkaliphilic lactic acid bacterium isolated from soft- and semi-hard cheeses. Int J Syst Evol Microbiol 63:1471–1478
Ishikawa M, Nakajima K, Ishizaki S, Kodama K, Okamoto-Kainuma A, Koizumi Y, Yamamoto Y, Yamasato K (2011) Alkalibacterium subtropicum sp. nov., a slightly halophilic and alkaliphilic marine lactic acid bacterium isolated from decaying marine algae. Int J Syst Evol Microbiol 61:2996–3002
Ishikawa M, Tanasupawat S, Nakajima K, Kanamori H, Ishizaki S, Kodama K, Okamoto-Kainuma A, Koizumi Y, Yamamoto Y, Yamasato K (2009) Alkalibacterium thalassium sp. nov., Alkalibacterium pelagium sp. nov., Alkalibacterium putridalgicola sp. nov. and Alkalibacterium kapii sp. nov., slightly halophilic and alkaliphilic marine lactic acid bacteria isolated from marine organisms and salted foods collected in Japan and Thailand. Int J Syst Evol Microbiol 59:1215–1226
Jack RW, Wan J, Gordon J, Harmark K, Davidson BE, Hillier AJ, Wettenhall RE, Hickey MW, Coventry MJ (1996) Characterization of the chemical and antimicrobial properties of piscicolin 126, a bacteriocin produced by Carnobacterium piscicola JG126. Appl Environ Microbiol 62:2897–2903
Janapatla R-P, Chang H-J, Hsu M-H, Hsieh Y-C, Lin T-Y, Chiu C-H (2011) Nasopharyngeal carriage of Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and Alloiococcus otitidis in young children in the era of pneumococcal immunization, Taiwan. Scand J Infect Dis 43:937–942
Janssen PH, Evers S, Rainey FA, Weiss N, Ludwig W, Harfoot CG, Schink B (1995) Lactosphaera gen. nov., a new genus of lactic acid bacteria, and transfer of Ruminococcus pasteurii Schink 1984 to Lactosphaera pasteurii comb. nov. Int J Syst Bacteriol 45:565–571
Jiang W, Zhang J, Chen H (2013) Pyrosequencing analysis of oral microbiota in children with severe early childhood dental caries. Curr Microbiol 67:537–542
Jöborn A, Dorsch M, Olsson JC, Westerdahl A, Kjelleberg S (1999) Carnobacterium inhibens sp nov., isolated from the intestine of Atlantic salmon (Salmo salar). Int J Syst Bacteriol 49:1891–1898
Johnsen BO, Ronning EJ, Onken A, Figved W, Jenum PA (2011) Dolosigranulum pigrum causing biomaterial-associated arthritis. APMIS 119:85–87
Jones D, Keddie R (1986) Brevibacterium. In: Sneath PHA, Mair NS, Sharp ME, Holt JG (eds) Bergey’s manual of systematic bacteriology, vol 2. Williams & Wilkins, Baltimore, pp 1301–1313
Józefiak D, Sip A, Rutkowski A, Rawski M, Kaczmarek S, Wołuń-Cholewa M, Engberg RM, Højberg O (2012) Lyophilized Carnobacterium divergens AS7 bacteriocin preparation improves performance of broiler chickens challenged with Clostridium perfringens. Poult Sci 91:1899–1907
Kabadjova P, Dousset X, Le CV, Prévost H (2002) Differentiation of closely related Carnobacterium food isolates based on 16S-23S ribosomal DNA intergenic spacer region polymorphism. Appl Environ Microbiol 68:5358–5366
Kanamoto T, Sato S, Inoue M (2000) Genetic heterogeneities and phenotypic characteristics of strains of the genus Abiotrophia and proposal of Abiotrophia para-adiacens sp. nov. J Clin Microbiol 38:492–498
Kaur R, Adlowitz DG, Casey JR, Zeng M, Pichichero ME (2010) Simultaneous assay for four bacterial species including Alloiococcus otitidis using multiplex-PCR in children with culture negative acute otitis media. Pediatr Infect Dis J 29:741–745
Kawamura Y, Hou XG, Sultana F, Liu S, Yamamoto H, Ezaki T (1995) Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., respectively. Int J Syst Bacteriol 45:798–803
Khouiti Z, Simon J-P (1997) Detection and partial characterization of a bacteriocin produced by Carnobacterium piscicola 213. J Ind Microbiol Biotechnol 19:28–33
Khouiti Z, Simon J-P (2004) Carnocin KZ213 produced by Carnobacterium piscicola 213 is adsorbed onto cells during growth. Its biosynthesis is regulated by temperature, pH and medium composition. J Ind Microbiol Biotechnol 31:5–10
Kim M-S, Roh SW, Nam Y-D, Yoon J-H, Bae J-W (2009) Carnobacterium jeotgali sp. nov., isolated from a Korean traditional fermented food. Int J Syst Evol Microbiol 59:3168–3171
Kroppenstedt RM, Kutzner HJ (1978) Biochemical taxonomy of some problem actinomycetes. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt 6:25–133
Laclaire L, Facklam R (2000) Antimicrobial susceptibility and clinical sources of Dolosigranulum pigrum cultures. Antimicrob Agents Chemother 44:2001–2003
Lai S, Goodacre R, Manchester LN (2004) Whole-organism fingerprinting of the genus Carnobacterium using Fourier transform infrared spectroscopy (FT-IR). Syst Appl Microbiol 27:186–191
Lamosa P, Mingote AI, Groudieva T, Klippel B, Egorova K, Jabbour D, Santos H, Antranikian G (2011) Gluconeotrehalose is the principal organic solute in the psychrotolerant bacterium Carnobacterium strain 17–4. Extremophiles 15:463–472
Laufer AS, Metlay JP, Gent JF, Fennie KP, Kong Y, Pettigrew MM (2011) Microbial communities of the upper respiratory tract and otitis media in children. mBio 2:e00245-10
Lauro FM, Chastain RA, Blankenship LE, Yayanos AA, Bartlett DH (2007) The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation. Appl Environ Microbiol 73:838–845
Laursen BG, Bay L, Cleenwerck I, Vancanneyt M, Swings J, Dalgaard P, Leisner JJ (2005) Carnobacterium divergens and Carnobacterium maltaromaticum as spoilers or protective cultures in meat and seafood: phenotypic and genotypic characterization. Syst Appl Microbiol 28:151–164
Lawson PA (2009) Genus III. Allofustis. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) The Firmicutes, vol 3, Bergey’s manual of systematic bacteriology. Springer, New York, pp 559–561
Lawson PA, Foster G, Falsen E, Sjŏdén B, Collins MD (1999) Abiotrophia balaenopterae sp. nov., isolated from the minke whale (Balaenoptera acutorostrata). Int J Syst Bacteriol 49:503–506
Lawson PA, Foster G, Falsen E, Ohlen M, Collins MD (2000) Atopobacter phocae gen. nov., sp nov., a novel bacterium isolated from common seals. Int J Syst Bacteriol 50:1755–1760
Lécuyer H, Audibert J, Bobigny A, Eckert C, Jannière-Nartey C, Buu-Hoï A, Mainardi J-L, Podglajen I (2007) Dolosigranulum pigrum causing nosocomial pneumonia and septicemia. J Clin Microbiol 45:3474–3475
Lee D-G, Trujillo ME, Kang H, Ahn T-Y (2014) Jeotgalibaca dankookensis gen. nov., sp. nov., a member of the family Carnobacteriaceae, isolated from seujeot (Korean traditional food). Int J Syst Bacteriol 64:1729–1735
Leisner JJ, Laursen BG, Prévost H, Drider D, Dalgaard P (2007) Carnobacterium: positive and negative effects in the environment and in foods. FEMS Microbiol Rev 31:592–613
Leisner JJ, Hansen MA, Larsen MH, Hansen L, Ingmer H, Sørensen SJ (2012) The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors. Int J Food Microbiol 152:107–115
Leskinen K, Hendolin P, Virolainen-Julkunen A, Ylikoski J, Jero J (2004) Alloiococcus otitidis in acute otitis media. Int J Pediatr Otorhinolaryngol 68:51–56
Lin J-C, Hou S-J, Huang L-U, Sun J-R, Chang W-K, Lu J-J (2006) Acute cholecystitis accompanied by acute pancreatitis potentially caused by Dolosigranulum pigrum. J Clin Microbiol 44:2298–2299
Ling Z, Liu X, Luo Y, Yuan L, Nelson KE, Wang Y, Xiang C, Li L (2013) Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates. BMC Genomics 14:390
Ling Z, Kong J, Liu F, Zhu H, Chen X, Wang Y, Li L, Nelson KE, Xia Y, Xiang C (2010) Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis. BMC Genomics 11:488
Liu JR, Tanner RS, Schumann P, Weiss N, McKenzie CA, Janssen PH, Seviour EM, Lawson PA, Allen TD, Seviour RJ (2002) Emended description of the genus Trichococcus, description of Trichococcus collinsii sp. nov., and reclassification of Lactosphaera pasteurii as Trichococcus pasteurii comb. nov. and of Ruminococcus palustris as Trichococcus palustris comb. nov. in the low-G+C gram-positive bacteria. Int J Syst Evol Microbiol 52:1113–1126
Lodders N, Kaempfer P (2012) A combined cultivation and cultivation-independent approach shows high bacterial diversity in water-miscible metalworking fluids. Syst Appl Microbiol 35:246–252
Lopes SP, Ceri H, Azevedo NF, Pereira MO (2012) Antibiotic resistance of mixed biofilms in cystic fibrosis: impact of emerging microorganisms on treatment of infection. Int J Antimicrob Agents 40:260–263
Ludwig W, Schleife K-H, Whitman WB (2009) Family III. Carnobacteriaceae fam. nov. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) The Firmicutes, vol 3, Bergey’s manual of systematic bacteriology. Springer, New York, p 549
Ludwig W, Schleife K-H, Whitman WB (2010) Validation list #132. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Bacteriol 60:469–472
Maoz A, Mayr R, Scherer S (2003) Temporal stability and biodiversity of two complex antilisterial cheese-ripening microbial consortia. Appl Environ Microbiol 69:4012–4018
Marchino T, Vela JI, Bassaganyas F, Sánchez S, Buil JA (2013) Acute-onset endophthalmitis caused by Alloiococcus otitidis following a dexamethasone intravitreal implant. Case Rep Ophthalmol 4:37–41
Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218
Marsh RL, Binks MJ, Beissbarth J, Christensen P, Morris PS, Leach AJ, Smith-Vaughan HC (2012) Quantitative PCR of ear discharge from Indigenous Australian children with acute otitis media with perforation supports a role for Alloiococcus otitidis as a secondary pathogen. BMC Ear Nose Throat Disord 12:11
Martin-Visscher LA, van Belkum MJ, Garneau-Tsodikova S, Whittal RM, Zheng J, McMullen LM, Vederas JC (2008) Isolation and characterization of carnocyclin A, a novel circular bacteriocin produced by Carnobacterium maltaromaticum UAL307. Appl Environ Microbiol 74:4756–4763
Matsuo J, Harimaya A, Fukumoto T, Nakamura S, Yoshida M, Takahashi K, Iida M, Fujii N, Yamaguchi H (2011) Impact of anaerobic and oligotrophic conditions on survival of Alloiococcus otitidis, implicated as a cause of otitis media. J Infect Chemother 17:478–482
Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic-acid by high-performance liquid-chromatography. Int J Syst Bacteriol 39:159–167
Métivier A, Pilet MF, Dousset X, Sorokine O, Anglade P, Zagorec M, Piard JC, Marion D, Cenatiempo Y, Fremaux C (1998) Divercin V41, a new bacteriocin with two disulfide bonds produced by Carnobacterium divergens V41: primary structure and genomic organization. Microbiology 144:2837–2844
Meziane-Cherif D, Decré D, Høiby EA, Courvalin P, Périchon B (2008) Genetic and biochemical characterization of CAD-1, a chromosomally encoded new class A penicillinase from Carnobacterium divergens. Antimicrob Agents Chemother 52:551–556
Miller A, Morgan ME, Libbey LM (1974) Lactobacillus maltaromicus, a new species producing a malty aroma. Int J Syst Bacteriol 24:346–354
Mora D, Scarpellini M, Franzetti L, Colombo S, Galli A (2003) Reclassification of Lactobacillus maltaromicus (Miller et al. 1974) DSM 20342T and DSM 20344 and Carnobacterium piscicola (Collins et al. 1987) DSM 20730T and DSM 20722 as Carnobacterium maltaromaticum comb. nov. Int J Syst Evol Microbiol 53:675–678
Mougari F, Jacquier H, Berçot B, Hannouche D, Nizard R, Cambau E, Zadegan F (2013) Prosthetic knee arthritis due to Granulicatella adiacens after dental cares. J Med Microbiol 62:1624–1627
Nakajima K, Hirota K, Nodasaka Y, Yumoto I (2005) Alkalibacterium iburiense sp. nov., an obligate alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 55:1525–1530
Newton RJ, Bootsma MJ, Morrison HG, Sogin ML, McLellan SL (2013) A microbial signature approach to identify fecal pollution in the waters off an urbanized coast of Lake Michigan. Microb Ecol 65:1011–1023
Nilsson L, Nielsen MK, Ng Y, Gram L (2002) Role of acetate in production of an autoinducible class IIa bacteriocin in Carnobacterium piscicola A9b. Appl Environ Microbiol 68:2251–2260
Ntougias S, Russell NJ (2001) Alkalibacterium olivoapovliticus gen. nov., sp. nov., a new obligately alkaliphilic bacterium isolated from edible-olive wash-waters. Int J Syst Evol Microbiol 51:1161–1170
Ntougias S, Russell NJ (2009) Genus II. Alkalibacterium. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) The Firmicutes, vol 3, Bergey’s manual of systematic bacteriology. Springer, New York, pp 549–557
Oberreuter H, Seiler H, Scherer S (2002) Identification of coryneform bacteria and related taxa by Fourier-transform infrared (FT-IR) spectroscopy. Int J Syst Evol Microbiol 52:91–100
Ohara-Nemoto Y, Tajika S, Sasaki M, Kaneko M (1997) Identification of Abiotrophia adiacens and Abiotrophia defectiva by 16S rRNA gene PCR and restriction fragment length polymorphism analysis. J Clin Microbiol 35:2458–2463
Ohara-Nemoto Y, Kishi K, Satho M, Tajika S, Sasaki M, Namioka A, Kimura S (2005) Infective endocarditis caused by Granulicatella elegans originating in the oral cavity. J Clin Microbiol 43:1405–1407
Okada S, Uchimura T, Kozaki M (1992) Nyusankin Jikken Manyuaru (Laboratory manual for lactic acid bacteria) (in Japanese). Asakura-shoten, Tokyo
Peter S, Holder C, Braun N, Jung M, Einspanier R, Gabler C (2013) Detection of lactic acid bacteria in the bovine uterus and vagina by real-time PCR approaches. Reprod Biol 13:53–54
Pettigrew MM, Laufer AS, Gent JF, Kong Y, Fennie KP, Metlay JP (2012) Upper respiratory tract microbial communities, acute otitis media pathogens and antibiotic use in healthy and sick children. Appl Environ Microbiol 78:6262–6270
Pfennig N (1978) Rhodocyclus purpureus gen. nov. and sp. nov., a ring-shaped, vitamin B12-requiring member of the Family Rhodospirillaceae. Int J Syst Bacteriol 28:283–288
Pikuta EV, Fisher D, Hoover RB (2011) Anaerobic cultures from preserved tissues of baby mammoth. In: vol 8152. pp 81520U-81520U-81510
Pikuta EV, Marsic D, Bej A, Tang J, Krader P, Hoover RB (2005) Carnobacterium pleistocenium sp. nov., a novel psychrotolerant, facultative anaerobe isolated from permafrost of the Fox Tunnel in Alaska. Int J Syst Evol Microbiol 55:473–478
Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Krader PE, Tang J (2006) Trichococcus patagoniensis sp. nov., a facultative anaerobe that grows at −5 °C, isolated from penguin guano in Chilean Patagonia. Int J Syst Evol Microbiol 56:2055–2062
Quadri LEN, Sailer M, Roy KL, Vederas JC, Stiles ME (1994) Chemical and genetic characterization of bacteriocins produced by Carnobacterium piscicola LV17B. J Biol Chem 269:12204–12211
Quartermain L, Tailor H, Njenga S, Bhattacharjee P, Rao GG (2013) Neonatal Granulicatella elegans bacteremia, London, UK. Emerg Infect Dis 19:1165–1166
Quirk PG, Guffanti AA, Plass RJ, Clejan S, Krulwich TA (1991) Protonophore-resistance and cytochrome expression in mutant strains of the facultative alkaliphile Bacillus firmus OF4. Biochim Biophys Acta 1058:131–140
Rachman C, Kabadjova P, Valcheva R, Prévost H, Dousset X (2004) Identification of Carnobacterium species by restriction fragment length polymorphism of the 16S-23S rRNA gene intergenic spacer region and species-specific PCR. Appl Environ Microbiol 70:4468–4477
Rahman A, Gleinser M, Lanhers M-C et al (2013) Adaptation of the lactic acid bacterium Carnobacterium maltaromaticum LMA 28 to the mammalian gastrointestinal tract: from survival in mice to interaction with human cells. Int Dairy J 34:93–99
Rainey FA (2009) Genus XIII. Trichococcus. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) The Firmicutes, vol 3, Bergey’s manual of systematic bacteriology. Springer, New York, pp 585–588
Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam nov. Int J Syst Bacteriol 46:1088–1092
Rastelli E, Giraffa G, Carminati D, Parolari G, Barbuti S (2005) Identification and characterization of halotolerant bacteria in spoiled dry-cured hams. Meat Sci 70:241–246
Ratcliffe P, Fang H, Thidholm E, Boräng S, Westling K, Özenci V (2013) Comparison of MALDI-TOF MS and VITEK 2 system for laboratory diagnosis of Granulicatella and Abiotrophia species causing invasive infections. Diagn Microbiol Infect Dis 77:216–219
Reasoner DJ, Geldreich EE (1985) A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49:1–7
Renko J, Koskela KA, Lepp PW, Oksala N, Levula M, Lehtimäki T, Solakivi T, Kunnas T, Nikkari S, Nikkari S (2013) Bacterial DNA signatures in carotid atherosclerosis represent both commensals and pathogens of skin origin. Eur J Dermatol 23:53–58
Rihakova J, Belguesmia Y, Petit VW, Pilet MF, Prevost H, Dousset X, Drider D (2009) Divercin V41 from gene characterization to food applications: 1998–2008, a decade of solved and unsolved questions. Lett Appl Microbiol 48:1–7
Ringø E, Holzapfe W (2000) Identification and characterization of carnobacteria associated with the gills of Atlantic salmon (Salmo salar L.). Syst Appl Microbiol 23:523–527
Roggenkamp A, Leitritz L, Baus K, Falsen E, Heesemann J (1998a) PCR for detection and identification of Abiotrophia spp. J Clin Microbiol 36:2844–2846
Roggenkamp A, Abele-Horn M, Trebesius KH, Tretter U, Autenrieth IB, Heesemann J (1998b) Abiotrophia elegans sp. nov., a possible pathogen in patients with culture-negative endocarditis. J Clin Microbiol 36:100–104
Roth E, Schwenninger SM, Eugster-Meier E, Lacroix C (2011) Facultative anaerobic halophilic and alkaliphilic bacteria isolated from a natural smear ecosystem inhibit Listeria growth in early ripening stages. Int J Food Microbiol 147:26–32
Roth E, Miescher Schwenninger S, Hasler M, Eugster-Meier E, Lacroix C (2010) Population dynamics of two antilisterial cheese surface consortia revealed by temporal temperature gradient gel electrophoresis. BMC Microbiol 10:74
Ruoff KL (1991) Nutritionally variant streptococci. Clin Microbiol Rev 4:184–190
Sampo M, Ghazouani O, Cadiou D, Trichet E, Hoffart L, Drancourt M (2013) Dolosigranulum pigrum keratitis: a three-case series. BMC Ophthalmol 13:31
Scarpellini M, Mora D, Colombo S, Franzetti L (2002) Development of genus/species-specific PCR analysis for identification of Carnobacterium strains. Curr Microbiol 45:24–29
Schaffer PA, Lifland B, Van SS, Casper DR, Davis CR (2013) Meningoencephalitis associated with Carnobacterium maltaromaticum-like bacteria in stranded juvenile salmon sharks (Lamna ditropis). Vet Pathol 50:412–417
Scheff G, Salcher O, Lingens F (1984a) Trichococcus flocculiformis gen. nov. sp. nov - a new gram-positive filamentous bacterium Isolated from bulking sludge. Appl Microbiol Biot 19:114–119
Scheff G, Salcher O, Lingens F (1984b) Trichococcus flocculiformis gen. nov., sp. nov. In validation of the publication of new names and new combinations previously effectively published outside the IJSB, list no. 15. Int J Syst Bacteriol 34:355–356
Schink B (1984) Fermentation of tartrate enantiomers by anaerobic bacteria, and description of two new species of strict anaerobes, Ruminococcus pasteurii and Ilyobacter tartaricus. Arch Microbiol 139:409–414
Schink B, Pfennig N (1982) Fermentation of trihydroxybenzenes by Pelobacter acidigallici gen. nov. sp. nov., a new strictly anaerobic, non-sporeforming bacterium. Arch Microbiol 133:195–201
Schleife KH, Kandler O (1972) Peptidoglycan types of bacterial cell-walls and their taxonomic implications. Bacteriol Rev 36:407–477
Schmidt VSJ, Mayr R, Wenning M, Gloeckner J, Busse H-J, Scherer S (2009) Bavariicoccus seileri gen. nov., sp. nov., isolated from the surface and smear water of German red smear soft cheese. Int J Syst Evol Microbiol 59:2437–2443
Schulthess B, Brodner K, Bloemberg GV, Zbinden R, Böttger EC, Hombach M (2013) Identification of gram-positive cocci by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry: comparison of different preparation methods and implementation of a practical algorithm for routine diagnostics. J Clin Microbiol 51:1834–1840
Senn L, Entenza JM, Greub G, Jaton K, Wenger A, Bille J, Calandra T, Prod’hom G (2006) Bloodstream and endovascular infections due to Abiotrophia defectiva and Granulicatella species. BMC Infect Dis 6:9
Shailaja TS, Sathiavathy KA, Unni G (2013) Infective endocarditis caused by Granulicatella adiacens. Indian Heart J 65:447–449
Shaw BG, Harding CD (1985) Atypical lactobacilli from vacuum packaged meats: comparison by DNA hybridization, cell composition and biochemical tests with a description of Lactobacillus carnis sp. nov. Syst Appl Microbiol 6:291–297
Siqueira JF Jr, Rôças IN (2006) Catonella morbi and Granulicatella adiacens: new species in endodontic infections. Oral Surg Oral Med Oral Pathol Oral Radiol Endod 102:259–264
Skaugen M, Cintas LM, Nes IF (2003) Genetics of bacteriocin production in lactic acid bacteria. In: Wood JB (ed) Genetics of lactic acid bacteria. Kluwer Academic, New York, pp 225–260
Snauwaert I, Hoste B, De Bruyne K, Peeters K, De Vuyst L, Willems A, Vandamme P (2013) Carnobacterium iners sp. nov., a psychrophilic, lactic acid-producing bacterium from the littoral zone of the Forlidas pond (Pensacola mountains), Antarctica. Int J Syst Evol Microbiol 63:1370–1375
Spielmeyer W, McMeekin TA, Miller J, Franzmann PD (1993) Phylogeny of the Antarctic bacterium, Carnobacterium alterfunditum. Polar Biol 13:501–503
Stackebrandt E, Schumann P, Swiderski J, Weiss N (1999) Reclassification of Brevibacterium incertum (Breed 1953) as Desemzia incerta gen. nov., comb. nov. Int J Syst Bacteriol 49:185–188
Stackebrandt E (2009) Genus VIII. Desemzia. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman WB (eds) Bergey’s manual of systematic bacteriology, 2nd edn., vol 3. The Firmicutes. Springer, New York, pp 568–572
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690
Stams AJM, Van Dijk JB, Dijkema C, Plugge CM (1993) Growth of syntrophic propionate-oxidizing bacteria with fumarate in the absence of methanogenic bacteria. Appl Environ Microbiol 59:1114–1119
Stams AJM, Huisman J, Garcia EPA, Muyzer G (2009) Citric acid wastewater as electron donor for biological sulfate reduction. Appl Microbiol Biotechnol 83:957–963
Starliper CE, Shotts EB, Brown J (1992) Isolation of Carnobacterium piscicola and an unidentified gram-positive bacillus from sexually mature and post-spawning rainbow trout Oncorhynchus mykiss. Dis Aquat Organ 13:181–187
Steinhaus EA (1941) A study of the bacteria associated with thirty species of insects. J Bacteriol 42:757–790
Stoffels G, Nissen-Meyer J, Gudmundsdottir A, Sletten K, Holo H, Nes IF (1992) Purification and characterization of a new bacteriocin isolated from a Carnobacterium sp. Appl Environ Microbiol 58:1417–1422
Swain B, Otta S (2012) Granulicatella adiacens—an unusual causative agent for carbuncle. Indian J Pathol Microbiol 55:609–610
Tahiri I, Desbiens M, Benech R, Kheadr E, Lacroix C, Thibault S, Ouellet D, Fliss I (2004) Purification, characterization and amino acid sequencing of divergicin M35: a novel class IIa bacteriocin produced by Carnobacterium divergens M35. Int J Food Microbiol 97:123–136
Tanasupawat S, Thongsanit J, Thawai C, Lee KC, Lee J-S (2011) Pisciglobus halotolerans gen. nov., sp. nov., isolated from fish sauce. Int J Syst Evol Microbiol 61:1688–1692
Tekippe EM, Shuey S, Winkler DW, Butler MA, Burnham CA (2013) Optimizing identification of clinically relevant gram-positive organisms using the Bruker Biotyper MALDI-TOF MS system. J Clin Microbiol 51:1421–1427
Terzaghi BE, Sandine WE (1975) Improved medium for lactic streptococci and their bacteriophages. Appl Microbiol 29:807–813
Thornley MJ (1957) Observations on the microflora of minced chicken meat irradiated with 4 mev cathode rays. J Appl Bacteriol 20:286–298
Thornley MJ, Sharp ME (1959) Microorganisms from chicken meat related to both lactobacilli and aerobic sporeformers. J Appl Bacteriol 22:368–376
Tindall BJ (1990) Lipid-composition of Halobacterium lacusprofundi. Fems Microbiol Lett 66:199–202
Toffin L, Zink K, Kato C, Pignet P, Bidault A, Bienvenu N, Birrien J-L, Prieur D (2005) Marinilactibacillus piezotolerans sp. nov., a novel marine lactic acid bacterium isolated from deep sub-seafloor sediment of the Nankai Trough. Int J Syst Evol Microbiol 55:345–351
Tulini FL, De Martinis ECP (2010) Improved adsorption-desorption extraction applied to the partial characterization of the antilisterial bacteriocin produced by Carnobacterium maltaromaticum C2. Braz J Microbiol 41:493–496
Tulini FL, Lohans CT, Bordon KCF, Zheng J, Arantes EC, Vederas JC, De Martinis ECP (2014) Purification and characterization of antimicrobial peptides from fish isolate Carnobacterium maltaromaticum C2: Carnobacteriocin X and carnolysins A1 and A2. Int J Food Microbiol 173:81–88
Tung SK, Chang TC (2011) Granulicatella. In: Liu D (ed) Molecular detection of human bacterial pathogens. CRC Press, Boca Raton, pp 249–255
van Gelder AH, Aydin R, Alves MM, Stams AJM (2012) 1,3-Propanediol production from glycerol by a newly isolated Trichococcus strain. Microb Biotechnol 5:573–578
VandeWalle JL, Goetz GW, Huse SM, Morrison HG, Sogin ML, Hoffmann RG, Yan K, McLellan SL (2012) Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure. Environ Microbiol 14:2538–2552
Venkateswaran N, Kalsow CM, Hindman HB (2013) Phlyctenular keratoconjunctivitis associated with Dolosigranulum pigrum. Ocul Immunol Inflamm 22:242–245
Voget S, Klippel B, Daniel R, Antranikian G (2011) Complete genome sequence of Carnobacterium sp. 17–4. J Bacteriol 193:3403–3404
von Graevenitz A (1993a) Revised nomenclature of Alloiococcus otitis. J Clin Microbiol 31:472
von Graevenitz A (1993b) Revised nomenclature of Alloiococcus otitis. J Clin Microbiol 31:1402
Wang M, Lin J, Sun S, Yuan X (2012) Identification of Granulicatella elegans from a case of infective endocarditis, based on the phenotypic characteristics and 16S rRNA gene sequence. J Cardiovasc Med. doi:10.2459/JCM.0b013e328356a471
Wasney MA, Holley RA, Jayas DS (2001) Cresol red thallium acetate sucrose inulin (CTSI) agar for the selective recovery of Carnobacterium spp. Int J Food Microbiol 64:167–174
Watanabe K, Nagao N, Toda T, Kurosawa N (2008) Changes in bacterial communities accompanied by aggregation in a fed-batch composting reactor. Curr Microbiol 56:458–467
Whitman WB, Ankwanda E, Wolfe RS (1982) Nutrition and carbon metabolism of Methanococcus voltae. J Bacteriol 149:852–863
Widdel F, Pfennig N (1981) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. I. Isolation of new sulfate-reducing bacteria enriched with acetate from saline environments. Description of Desulfobacter postgatei gen. nov., sp. nov. Arch Microbiol 129:395–400
Widdel F, Bak F (1992) Gram-negative mesophilic sulfate-reducing bacteria. In: Balows A, Trüper H, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes. Springer, New York, pp 3352–3378
Wolin EA, Wolin MJ, Wolfe RS (1963) Formation of methane by bacterial extracts. J Biol Chem 238:2882–2886
Woo PCY, Teng JLL, Yeung JMY, Tse H, Lau SKP, Yuen K-Y (2011) Automated identification of medically important bacteria by 16S rRNA gene sequencing using a novel comprehensive database, 16SpathDB. J Clin Microbiol 49:1799–1809
Worobo RW, Henkel T, Sailer M, Roy KL, Vederas JC, Stiles ME (1994) Characteristics and genetic determinant of a hydrophobic peptide bacteriocin, carnobacteriocin A, produced by Carnobacterium piscicola LV17A. Microbiology 140:517–526
Worobo RW, Van Belkum MJ, Sailer M, Roy KL, Vederas JC, Stiles ME (1995) A signal peptide secretion--‐dependent bacteriocin from Carnobacterium divergens. J Bacteriol 177:3143–3149
WPCM (1989) IUMS/JCFMH working party for cultural media. Cresol red thallium acetate sucrose (CTAS) agar. In: Baird, Corry, Curtis, Mossel, Skovgaard (eds) Pharmacopoeia of cultural media for food microbiology: additional monographs. Elsevier, Amsterdam, pp 129–131
Xiao D, Zhao F, Lv M, Zhang H, Zhang Y, Huang H, Su P, Zhang Z, Zhang J (2012) Rapid identification of microorganisms isolated from throat swab specimens of community-acquired pneumonia patients by two MALDI-TOF MS systems. Diagn Microbiol Infect Dis 73:301–307
Xu J, Yang H, Lai X, Fu X, Wu J, Huang L, Yu X, Wu Y, Wu Y, Liu B (1997) Etiological study for a case of multi-bacterial synergistic gangrene. Chin Sci Bull 42:511–517
Yamaguchi T, Soutome S, Oho T (2011) Identification and characterization of a fibronectin-binding protein from Granulicatella adiacens. Mol Oral Microbiol 26:353–364
Yamasato K, Ishikawa M (2009) Genus XII. Marinilactibacillus. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (eds) The Firmicutes, vol 3, Bergey’s manual of systematic bacteriology. Springer, New York, pp 580–584
Yamazaki K, Suzuki M, Kawai Y, Inoue N, Montville TJ (2005) Purification and characterization of a novel class IIa bacteriocin, piscicocin CS526, from surimi-associated Carnobacterium piscicola CS526. Appl Environ Microbiol 71:554–557
Yang C, Niu Y, Su H, Wang Z, Tao F, Wang X, Tang H, Ma C, Xu P (2010) A novel microbial habitat of alkaline black liquor with very high pollution load: microbial diversity and the key members in application potentials. Bioresour Technol 101:1737–1744
Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R (2010) Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291–299
Yoshida N, Takahashi N, Hiraishi A (2005) Phylogenetic characterization of a polychlorinated-dioxin-dechlorinating microbial community by use of microcosm studies. Appl Environ Microbiol 71:4325–4334
Yumoto I, Hirota K, Nodasaka Y, Tokiwa Y, Nakajima K (2008) Alkalibacterium indicireducens sp. nov., an obligate alkaliphile that reduces indigo dye. Int J Syst Evol Microbiol 58:901–905
Yumoto I, Hirota K, Nodasaka Y, Yokota Y, Hoshino T, Nakajima K (2004) Alkalibacterium psychrotolerans sp., nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 54:2379–2383
Zaura E, Keijser BJF, Huse SM, Crielaard W (2009) Defining the healthy “core microbiome” of oral microbial communities. BMC Microbiol 9:259
Zhang T, Shao M-F, Ye L (2012) 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. ISME J 6:1137–1147
Zheng X, Freeman AF, Villafranca J, Shortridge D, Beyer J, Kabat W, Dembkowski K, Shulman ST (2004) Antimicrobial susceptibilities of invasive pediatric Abiotrophia and Granulicatella isolates. J Clin Microbiol 42:4323–4326
Zhilina TN, Kotsyurbenko OR, Osipov GA, Kostrikina NA, Zavarzin GA (1995) Ruminococcus palustris sp. nov.—a psychroactive anaerobic organism from a swamp. Mikrobiologiya 64:674–680
Zúñiga M, Pardo I, Ferrer S (1993) An improved medium for distinguishing between homofermentative and heterofermentative lactic acid bacteria. Int J Food Microbiol 18:37–42
Acknowledgments
We to thank Pablo Yarza of the Marine Microbiology Group, Institut Mediterrani d’Estudis Avanc¸ats (CSIC-UIB), C/ Miquel Marque’s 21,E-07190 Esporles, Illes Balears, Mallorca, Spain for the construction of the phylogenetic tree.
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Lawson, P.A., Caldwell, M.E. (2014). The Family Carnobacteriaceae . In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-30120-9_209
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