Encyclopedia of Algorithms

Living Edition
| Editors: Ming-Yang Kao

Maximum Agreement Subtree (of 3 or More Trees)

  • Teresa M. PrzytyckaEmail author
Living reference work entry
DOI: https://doi.org/10.1007/978-3-642-27848-8_221-2

Years and Authors of Summarized Original Work

1995; Farach, Przytycka, Thorup

Problem Definition

The maximum agreement subtree problem for k trees (k-MAST) is a generalization of a similar problem for two trees (MAST). Consider a tuple of k rooted leaf-labeled trees (T1, T2… Tk). Let A = { a1, a2, … an} be the set of leaf labels. Any subset BA uniquely determines the so-called topological restriction T | B of the three T to B. Namely, T | B is the topological subtree of T spanned by all leaves labeled with elements from B and the lowest common ancestors of all pairs of these leaves. In particular, the ancestor relation in T | B is defined so that it agrees with the ancestor relation in T. A subset B of A such T1 | B, , Tk | B are isomorphic is called an agreement set.

Problem 1 (k-MAST).

INPUT: A tuple \(\vec{T} = (T^{1},\ldots, T^{k})\)

Keywords

Tree alignment 
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Notes

Acknowledgements

This work was supported by the Intramural Research Program of the National Institutes of Health, National Library of Medicine.

Recommended Reading

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Copyright information

© Springer Science+Business Media New York 2015

Authors and Affiliations

  1. 1.Computational Biology Branch, NCBINIHBethesdaUSA