Encyclopedia of Geochemistry

2018 Edition
| Editors: William M. White

Biopolymers and Macromolecules

  • Markus KleberEmail author
  • Patrick Reardon
Reference work entry
DOI: https://doi.org/10.1007/978-3-319-39312-4_172

Definition

A polymer is “a chemical compound or mixture of compounds formed by polymerization and consisting essentially of repeating structural units” (Merriam-Webster 2017). As the original meaning of the term polymer does not include any reference to molecular size, Staudinger and Fritschi (1922) introduced the word macromolecule to describe large covalently bonded organic chain molecules containing more than 103 atoms. By convention, the term macromolecule is reserved for organic molecules; it does not cover inorganic geopolymers such as obsidian. The official definition (IUPAC 2006) of the term macromolecule regards a molecule as having a high relative molecular mass if the addition or removal of one or a few of the units has a negligible effect on the molecular properties. Also, when a molecule has a high molecular mass and comprises the multiple repetitions of units derived from molecules of low relative molecular mass, it may be described as either macromolecular or polymeric. S...

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References

  1. Berglund B (2015) Environmental dissemination of antibiotic resistance genes and correlation to anthropogenic contamination with antibiotics. Infect Ecol Epidemol 5:28564Google Scholar
  2. Burns RG, DeForest JL, Marxsen J, Sinsabaugh RL, Stromberger ME, Wallenstein MD, Weintraub MN, Zoppini A (2013) Soil enzymes in a changing environment: current knowledge and future directions. Soil Biol Biochem 58:216–234CrossRefGoogle Scholar
  3. Chourey K et al (2010) Direct cellular lysis/protein extraction protocol for soil metaproteomics. J Proteome Res 9:6615–6622CrossRefGoogle Scholar
  4. Demarchi B et al (2016) Protein sequences bound to mineral surfaces persist into deep time. elife 5:e17092CrossRefGoogle Scholar
  5. Derenne S, Largeau C (2001) A review of some important families of refractory macromolecules: composition, origin and fate in soils and sediments. Soil Sci 166:833–847CrossRefGoogle Scholar
  6. Fedor MJ, Williamson JR (2005) The catalytic diversity of RNAs. Nat Rev Mol Cell Biol 6:399–412CrossRefGoogle Scholar
  7. Gianfreda L, Rao MA, Mora M (2011) Enzymatic activity as influenced by soil mineral and humic colloids and its impact on biogeochemical processes. Handbook of Soil Science Resource of Management and Environmental Impacts, Second Edition, CRC Press, Taylor & Francis, Boca Raton, Fl., Chapter 5, pp. 1–24Google Scholar
  8. Gougeon R et al (2003) Polypeptide adsorption on a synthetic montmorillonite: a combined solid-state NMR spectroscopy, X-ray diffraction, thermal analysis and N2 adsorption study. Eur J Inorg Chem 7:1366–1372CrossRefGoogle Scholar
  9. Haider K, Martin JP (1975) Decomposition of specifically C14 labeled benzoic and cinnamic acid derivatives in soil. Soil Sci Soc Am J 39:657–662CrossRefGoogle Scholar
  10. Haider K, Trojanowski J (1975) Decomposition of specifically C-14-labeled phenols and dehydropolymers of coniferyl alcohol as models for lignin degradation by soft and white rot fungi. Arch Microbiol 105:33–41CrossRefGoogle Scholar
  11. Hedges JI (1988) Polymerization of humic substances in natural environments. In: Frimmel FH, Christman RF (eds) Humic substances and their role in the environment. Wiley, Chichester, pp 45–58Google Scholar
  12. Hedges JI, Keil RG (1999) Organic geochemical perspectives on estuarine processes: sorption reactions and consequences. Mar Chem 65:55–65CrossRefGoogle Scholar
  13. Hedges JI, Oades JM (1997) Comparative organic geochemistries of soils and marine sediments. Org Geochem 27:319–361CrossRefGoogle Scholar
  14. Hibbing ME, Fuqua C, Parsek MR, Peterson SB (2010) Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Microbiol 8:15–25CrossRefGoogle Scholar
  15. Huang PM, Wang MK, Chiu CY (2005) Soil mineral-organic matter-microbe interactions: impacts on biogeochemical processes and biodiversity in soils. Pedobiologia 49:609–635CrossRefGoogle Scholar
  16. IUPAC (2006) Compendium of chemical terminology, 2nd edn. (the “Gold Book”). Compiled by A. D. McNaught and A. Wilkinson XML on-line corrected version: (2006-) created by M. Nic, J. Jirat, B. Kosata; updates compiled by A. Jenkins: Blackwell, Oxford (1997)Google Scholar
  17. Jenkinson DS (1981) The fate of plant and animal residues in soil. In: Greenland DJ, MHB H (eds) The chemistry of sol processes. Wiley, Chichester, pp 505–561Google Scholar
  18. Johnson CJ, Phillips KE, Schramm PT, McKenzie D, Aiken JM, Pedersen JA (2006) Prions adhere to soil minerals and remain infectious. PLoS Pathog 2:e32: 296–302CrossRefGoogle Scholar
  19. Keiblinger KM, Wilhartitz IC, Schneider T, Roschitzki B, Schmid E, Eberl L, Riedel K, Zechmeister-Boltenstern S (2012) Soil metaproteomics – comparative evaluation of protein extraction protocols. Soil Biol Biochem 54:14–24CrossRefGoogle Scholar
  20. Keiluweit M, Bougoure JJ, Zeglin LH, Myrold DD, Weber PK, Pett-Ridge J, Kleber M, Nico PS (2012) Nano-scale investigation of the association of microbial nitrogen residues with iron (hydr)oxides in a forest soil O-horizon. Geochim Cosmochim Acta 95:213–226CrossRefGoogle Scholar
  21. Kelleher BP, Simpson AJ (2006) Humic substances in soils: are they really chemically distinct? Environ Sci Technol 40:4605–4611CrossRefGoogle Scholar
  22. Kleber M, Sollins P, Sutton R (2007) A conceptual model of organo-mineral interactions in soils: self-assembly of organic molecular fragments into zonal structures on mineral surfaces. Biogeochemistry 85:9–24CrossRefGoogle Scholar
  23. Kögel-Knabner I (2002) The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biol Biochem 34(2):139–162CrossRefGoogle Scholar
  24. Lehmann J, Kleber M (2015) The contentious nature of soil organic matter. Nature 528:60–68CrossRefGoogle Scholar
  25. Lehmann J, Solomon D, Kinyangi J, Dathe L, Wirick S, Jacobsen C (2008) Spatial complexity of soil organic matter forms at nanometre scales. Nat Geosci 1:238–242CrossRefGoogle Scholar
  26. Lorenz MG, Wackernagel W (1994) Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev 58:563–602Google Scholar
  27. Martin JP, Haider K (1971) Microbial activity in relation to soil humus formation. Soil Sci 111:54–63CrossRefGoogle Scholar
  28. Martin JP, Zunino H, Peirano P, Caiozzi M, Haider K (1982) Decomposition of 14C-labeled lignins, model humic acid polymers, and funal melanins in allophanic soils. Soil Biol Biochem 14:289–293CrossRefGoogle Scholar
  29. Masoom H et al (2016) Soil organic matter in its native state: unravelling the most complex biomaterial on Earth. Environ Sci Technol 50:1670–1680CrossRefGoogle Scholar
  30. Merriam-Webster ndW (2017) “Polymer” (9 May 2017)Google Scholar
  31. Miller MB, Bassler BL (2001) Quorum sensing in bacteria. Annu Rev Microbiol 55:165–199CrossRefGoogle Scholar
  32. Myneni SCB, Brown JT, Martinez GA, Meyer-Ilse W (1999) Imaging of humic substance macromolecular structures in water and soils. Science 286:1335–1337CrossRefGoogle Scholar
  33. Norde W (2008) My voyage of discovery to proteins in flatland ... and beyond. Colloids Surf B-Biointer 61:1–9CrossRefGoogle Scholar
  34. Piccolo A (2001) The supramolecular structure of humic substances. Soil Sci 166:810–832CrossRefGoogle Scholar
  35. Quiquampoix H, Burns RG (2007) Interactions between proteins and soil mineral surfaces: environmental and health consequences. Elements 3:401–406CrossRefGoogle Scholar
  36. Reardon PN, Chacon SS, Walter ED, Bowden ME, Washton NM, Kleber M (2016) Abiotic protein fragmentation by manganese oxide: implications for a mechanism to supply soil biota with oligopeptides. Environ Sci Technol 50(7):3486–3493CrossRefGoogle Scholar
  37. Russo F, Johnson CJ, Johnson CJ, McKenzie D, Aiken JM, Pedersen JA (2009) Pathogenic prion protein is degraded by a manganese oxide mineral found in soils. J Gen Virol 90:275–280CrossRefGoogle Scholar
  38. Staudinger H, Fritschi J (1922) Über die Hydrierung des Kautschuks und über seine Konstitution. Helv Chim Acta 5:785–806CrossRefGoogle Scholar
  39. Sutton R, Sposito G (2005) Molecular structure in soil humic substances: the new view. Environ Sci Technol 39:9009–9015CrossRefGoogle Scholar
  40. Vandenbroucke M, Largeau C (2007) Kerogen origin, evolution and structure. Org Geochem 38:719–833CrossRefGoogle Scholar
  41. Waksman SA (1936) Humus. Origin, chemical composition and importance in nature. Williams and Wilkins, BaltimoreGoogle Scholar
  42. Wershaw RL (1993) Model for humus in soils and sediments. Envion Sci Technol 27:814–816CrossRefGoogle Scholar
  43. Wu X, Xiong E, Wang W, Scali M, Cresti M (2014) Universal sample preparation method integrating trichloroacetic acid/acetone precipitation with phenol extraction forcrop proteomic analysis. Nat Protoc 9:362–374CrossRefGoogle Scholar
  44. Yang J, Yang Y, Wu W-M, Zhao J, Jiang L (2014) Evidence of polyethylene biodegradation by bacterial strains from the guts of plastic-eating waxworms. Environ Sci Technol 48:13776–13784CrossRefGoogle Scholar
  45. Yang Y, Yang J, Wu WM, Zhao J, Song YL, Gao LC, Yang RF, Jiang L (2015) Biodegradation and mineralization of polystyrene by plastic-eating mealworms: part 2. Role Gut Microorgan Environ Sci Technol 49:12087–12093CrossRefGoogle Scholar
  46. Yoshida S, Hiraga K, Takehana T, Taniguchi I, Yamaji H, Maeda Y, Toyohara K, Miyamoto K, Kimura Y, Oda K (2016) A bacterium that degrades and assimilates poly(ethylene terephthalate). Science 351:1196–1199CrossRefGoogle Scholar

Copyright information

© Springer International Publishing AG, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Department of Crop and Soil ScienceOregon State UniversityCorvallisUSA
  2. 2.Nuclear Magnetic Resonance FacilityOregon State UniversityCorvallisUSA