Skip to main content

Proteomics and Metaproteomics

  • Reference work entry
  • First Online:
Book cover Encyclopedia of Metagenomics

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 499.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Chen YT, Chen HW, et al. Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers. J Proteome. 2012;75(12):3529-45

    CAS  Google Scholar 

  • de Godoy LM, Olsen JV, et al. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature. 2008;455(7217):1251–4.

    PubMed  Google Scholar 

  • Elliott MH, Smith DS, et al. Current trends in quantitative proteomics. J Mass Spectrom. 2009;44(12):1637–60.

    CAS  PubMed  Google Scholar 

  • Fouts DE, Pieper R, et al. Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury. J Transl Med. 2012;10(1):174.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Gorg A, Weiss W, et al. Current two-dimensional electrophoresis technology for proteomics. Proteomics. 2004;4(12):3665–85.

    PubMed  Google Scholar 

  • Hall-Stoodley L, Costerton JW, et al. Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol. 2004;2(2):95–108.

    CAS  PubMed  Google Scholar 

  • Ho Y, Gruhler A, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002;415(6868):180–3.

    CAS  PubMed  Google Scholar 

  • Kuhner S, van Noort V, et al. Proteome organization in a genome-reduced bacterium. Science. 2009;326(5957):1235–40.

    PubMed  Google Scholar 

  • Markert S, Arndt C, et al. Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila. Science. 2007;315(5809):247–50.

    CAS  PubMed  Google Scholar 

  • Mueller LN, Brusniak MY, et al. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J Proteome Res. 2008;7(1):51–61.

    CAS  PubMed  Google Scholar 

  • Nagaraj N, Wisniewski JR, et al. Deep proteome and transcriptome mapping of a human cancer cell line. Mol Syst Biol. 2011;7:548.

    PubMed Central  PubMed  Google Scholar 

  • O’Farrell PH. High resolution two-dimensional electrophoresis of proteins. J Biol Chem. 1975;250(10):4007–21.

    PubMed Central  PubMed  Google Scholar 

  • Olsen JV, Vermeulen M, et al. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci Signal. 2010;3(104):ra3.

    PubMed  Google Scholar 

  • Picotti P, Rinner O, et al. High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nat Methods. 2010;7(1):43–6.

    CAS  PubMed  Google Scholar 

  • Pieper R, Gatlin CL, et al. The human serum proteome: display of nearly 3700 chromatographically separated protein spots on two-dimensional electrophoresis gels and identification of 325 distinct proteins. Proteomics. 2003;3(7):1345–64.

    CAS  PubMed  Google Scholar 

  • Pieper R, Huang ST, et al. Characterizing the dynamic nature of the Yersinia pestis periplasmic proteome in response to nutrient exhaustion and temperature change. Proteomics. 2008;8(7):1442–58.

    CAS  PubMed  Google Scholar 

  • Prokisch H, Scharfe C, et al. Integrative analysis of the mitochondrial proteome in yeast. PLoS Biol. 2004;2(6):e160.

    PubMed Central  PubMed  Google Scholar 

  • Ram RJ, Verberkmoes NC, et al. Community proteomics of a natural microbial biofilm. Science. 2005;308(5730):1915–20.

    CAS  PubMed  Google Scholar 

  • Rodriguez-Valera F. Environmental genomics, the big picture? FEMS Microbiol Lett. 2004;231(2):153–8.

    CAS  PubMed  Google Scholar 

  • Speers AE, Cravatt BF. Activity-based protein profiling (ABPP) and click chemistry (CC)-ABPP by MudPIT mass spectrometry. Curr Protoc Chem Biol. 2009;1:29–41.

    PubMed Central  PubMed  Google Scholar 

  • van Noort V, Seebacher J, et al. Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Mol Syst Biol. 2012;8:571.

    PubMed Central  PubMed  Google Scholar 

  • Verberkmoes NC, Russell AL, et al. Shotgun metaproteomics of the human distal gut microbiota. ISME J. 2009;3(2):179–89.

    CAS  PubMed  Google Scholar 

  • Wolf-Yadlin A, Sevecka M, et al. Dissecting protein function and signaling using protein microarrays. Curr Opin Chem Biol. 2009;13(4):398–405.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Wolters DA, Washburn MP, et al. An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem. 2001;73(23):5683–90.

    CAS  PubMed  Google Scholar 

  • Yates JR, Ruse CI, et al. Proteomics by mass spectrometry: approaches, advances, and applications. Annu Rev Biomed Eng. 2009;11:49–79.

    CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Rembert Pieper .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer Science+Business Media New York

About this entry

Cite this entry

Pieper, R., Huang, ST., Suh, MJ. (2015). Proteomics and Metaproteomics. In: Nelson, K.E. (eds) Encyclopedia of Metagenomics. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-7478-5_690

Download citation

Publish with us

Policies and ethics