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Mobile Metagenome

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References

  • Breitbart M, Hewson I, Felts B, et al. Metagenomic analyses of an uncultured viral community from human feces. J Bacteriol. 2003;185:6220–3.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Caporaso JG, Knight R, Kelley ST. Host-associated and free-living phage communities differ profoundly in phylogenetic composition. PLoS ONE. 2011;6:e16900.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Claesson MJ, Li Y, Leahy S, et al. Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci U S A. 2006;103:6718–23.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Corr SC, Li Y, Riedel CU, et al. Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118. Proc Natl Acad Sci U S A. 2007;104:7617–21.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Croxen MA, Finlay BB. Molecular mechanisms of Escherichia coli pathogenicity. Nat Rev Microbiol. 2010;8:26–38.

    CAS  PubMed  Google Scholar 

  • Ebdon J, Muniesa M, Taylor H. The application of a recently isolated strain of Bacteroides (GB-124) to identify human sources of faecal pollution in a temperate river catchment. Water Res. 2007;41:3683–90.

    Article  CAS  PubMed  Google Scholar 

  • Hehemann J-H, Correc G, Barbeyon T, et al. Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature. 2010;464:908–12.

    Article  CAS  PubMed  Google Scholar 

  • Jones BV. The human gut mobile metagenome: a metazoan perspective. Gut Microbes. 2010;1(6):417–33.

    Article  Google Scholar 

  • Jones BV, Marchesi JR. Accessing the mobile metagenome of the human gut microbiota. Mol Biosyst. 2007;3:749–58.

    Article  CAS  PubMed  Google Scholar 

  • Jones BV, Sun F, Marchesi JR. Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome. BMC Genomics. 2010;11:46.

    Article  PubMed Central  PubMed  Google Scholar 

  • Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, et al. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res. 2007;14:169–81.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Lepage P, Colombet J, Marteau P, et al. Dysbiosis in inflammatory bowel disease: a role for bacteriophages? Gut. 2008;57:424–5.

    Article  CAS  PubMed  Google Scholar 

  • Ley RE, Peterson DA, Gordon JI. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006;124:837–48.

    Article  CAS  PubMed  Google Scholar 

  • Licht TN, Wilcks A. Conjugative gene transfer in the gastrointestinal environment. Adv Appl Microbiol. 2005;58:77–95.

    Article  Google Scholar 

  • Lozupone CA, Hamady M, Cantral BL, et al. The convergence of carbohydrate active gene repertoires in human gut microbes. Proc Natl Acad Sci U S A. 2008;105:15076–81.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • McNiel NI. The contribution of the large intestine to energy supplies in man. Am J Clin Nutr. 1984;39:338–42.

    Google Scholar 

  • Ochman H, Lawrence JG, Groisman EA. Lateral gene transfer and the nature of bacterial innovation. Nature. 2000;405:299–304.

    Article  CAS  PubMed  Google Scholar 

  • Ogilvie LA, Firouzmand S, Jones BV. Evolutionary, ecological and biotechnological perspectives on plasmids resident in the human gut mobile metagenome. Bioeng Bugs. 2012a;3(1):1–19.

    Article  Google Scholar 

  • Ogilvie LA, Caplin J, Dedi C, et al. Comparative (meta)genomic analysis and ecological profiling of human gut-specific bacteriophage ɸ B124-14. PLoS ONE. 2012b;7:e35053.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010;464:59–65.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Reyes A, Haynes M, Hanson N, et al. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 2010;466:334–8.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Salyers AA, Gupta A, Wang YP. Human intestinal bacteria as reservoirs for antibiotic resistance genes. Trends Microbiol. 2004;12:412–6.

    Article  CAS  PubMed  Google Scholar 

  • Smalla K, Osburne AM, Wellington EMH. Isolation and characterisation of plasmids from bacteria. In: CM Thomas (ed) The horizontal gene pool, bacterial plasmids and gene spread. Amsterdam: Harwood Academic Publishers; 2000. p. 207–48.

    Google Scholar 

  • Smilie CD, Smith MB, Friedman J, et al. Ecology drives a global network of gene exchange connecting the human microbiome. Nature. 2011. doi:10.1038/nature10571.

    Google Scholar 

  • Sommer MOA, Dantas G, Church GM. Functional characterisation of the antibiotic resistance reservoir in the human microflora. Science. 2009;325:1128–31.

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Brian V. Jones .

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© 2012 Springer Science+Business Media New York

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Jones, B.V. (2012). Mobile Metagenome. In: Nelson, K. (eds) Encyclopedia of Metagenomics. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-6418-1_97-3

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  • DOI: https://doi.org/10.1007/978-1-4614-6418-1_97-3

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  • Online ISBN: 978-1-4614-6418-1

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