Skip to main content

Mammoth and Woolly Rhinoceros, Metagenomics of

  • Living reference work entry
  • First Online:
  • 145 Accesses

Synonyms

Microbiome of Mammoth and Woolly rhinoceros

Definition

Metagenomics is the study of metagenome, a composite of the animal genes and genes present in the genomes of microorganisms colonizing their bodies. More narrow definition of the term metagenome is limited to genomes of only microbial community (microbiome).

Introduction

The subject of this entry is to outline the information available on the composition of the gut microbiomes of two extinct herbivorous animals – woolly mammoth (Mammuthus primigenius) and woolly rhinoceros (Coelodonta antiquitatis). The microbiome of an intestinal tract plays important role in the animal nutrition and overall health. In particular, herbivores have evolved to maintain microbial consortia that coordinate relatively rapid rates of degradation of complex plant carbohydrates under anaerobic conditions (Flint 1997). The coevolution of herbivorous mammalian lineages and their gut microbes involved enlargement of the foregut or hindgut to...

This is a preview of subscription content, log in via an institution.

References

  • Boeskorov GG, Lazarev PA, Bakulina NT, Shchelchkova MV, Davydov SP, Solomonov NG. Preliminary study of a mummified woolly rhinoceros from the lower reaches of the Kolyma River. Dokl Biol Sci. 2009;424:53–6.

    Article  CAS  PubMed  Google Scholar 

  • Cousin MA. Presence and activity of psychrotrophic microorganisms in milk and dairy products: a review. J Food Prot. 1982;45:172–207.

    Google Scholar 

  • Field EK, D’Imperio S, Miller AR, Van Engelen MR, Gerlach R, Lee BD, Apel WA, Peyton BM. Application of molecular techniques to elucidate the influence of cellulosic waste on the bacterial community structure at a simulated low-level-radioactive-waste site. Appl Environ Microbiol. 2010;76:3106–15.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Fisher DC, Tikhonov AN, Kosintsev PA, Rountrey AN, Buigues B, Van Der Plicht J. Anatomy, death, and preservation of a woolly mammoth (Mammuthus primigenius) calf, Yamal Peninsula, northwest Siberia. Quat Int. 2012;255:94–105.

    Article  Google Scholar 

  • Flint HJ. The rumen microbial ecosystem – some recent developments. Trends Microbiol. 1997;5:483–8.

    Article  CAS  PubMed  Google Scholar 

  • Hofreiter M, Jaenicke V, Serre D, Haeseler Av A, Paabo S. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 2001;29:4793–9.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Kosintsev PA, Lapteva EG, Trofimova SS, Zanina OG, Tikhonov AN, van der Plicht J. The content of the intestines of mammoth calf (Mammuthus primigenius Blumenbach, 1799) from the Yuribei River (Yamal Peninsula). Dokl Biol Sci. 2010;432:556–8.

    Article  Google Scholar 

  • Larue R, Yu Z, Parisi VA, Egan AR, Morrison M. Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environ Microbiol. 2005;7:530–43.

    Article  CAS  PubMed  Google Scholar 

  • Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI. Evolution of mammals and their gut microbes. Science. 2008;320:1647–51.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Mardanov AV, Bulygina ES, Nedoluzhko AV, Kadnikov VV, Beletskii AV, Tsygankova SV, Tikhonov AN, Ravin NV, Prokhorchuk EB, Skryabin KG. Molecular analysis of the intestinal microbiome composition of mammoth and woolly rhinoceros. Dokl Biochem Biophys. 2012;445:203–6.

    Article  CAS  PubMed  Google Scholar 

  • Miller W, Drautz DI, Ratan A, Pusey B, Qi J, Lesk AM, Tomsho LP, Packard MD, Zhao F, Sher A, Tikhonov A, Raney B, Patterson N, Lindblad-Toh K, Lander ES, Knight JR, Irzyk GP, Fredrikson KM, Harkins TT, Sheridan S, Pringle T, Schuster SC. Sequencing the nuclear genome of the extinct woolly mammoth. Nature. 2008;456:387–90.

    Article  CAS  PubMed  Google Scholar 

  • Nelson KE, Zinder SH, Hance I, Burr P, Odongo D, Wasawo D, Odenyo A, Bishop R. Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche. Environ Microbiol. 2003;5:1212–20.

    Article  PubMed  Google Scholar 

  • Overballe-Petersen S, Orlando L, Willerslev E. Next-generation sequencing offers new insights into DNA degradation. Trends Biotechnol. 2012;30:364–8.

    Article  CAS  PubMed  Google Scholar 

  • Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science. 2006;311(5759):392–4.

    Article  CAS  PubMed  Google Scholar 

  • Van Geel B, Fisher DC, Rountrey AN, Van Arkel J, Duivenvoorden JF, Nieman AM, Van Reenen GBA, Tikhonov AN, Buiguese B, Gravendeel B. Palaeo-environmental and dietary analysis of intestinal contents of a mammoth calf (Yamal Peninsula, northwest Siberia). Quat Sci Rev. 2011;30:3935–46.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nikolai V. Ravin .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media New York

About this entry

Cite this entry

Ravin, N.V., Prokhortchouk, E.B., Skryabin, K.G. (2013). Mammoth and Woolly Rhinoceros, Metagenomics of. In: Nelson, K. (eds) Encyclopedia of Metagenomics. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-6418-1_744-3

Download citation

  • DOI: https://doi.org/10.1007/978-1-4614-6418-1_744-3

  • Received:

  • Accepted:

  • Published:

  • Publisher Name: Springer, New York, NY

  • Online ISBN: 978-1-4614-6418-1

  • eBook Packages: Springer Reference Biomedicine and Life SciencesReference Module Biomedical and Life Sciences

Publish with us

Policies and ethics