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Abiotic Stress Tolerant Crops: Genes, Pathways and Bottlenecks

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Abbreviations

Abiotic stress:

Any negative impact on a living organism caused by a nonliving factor in the environment in which the organism is present.

Biological modeling:

In silico description of a biological process to generate predictions for experimental validation.

Conventional breeding:

Development of new plant varieties by selection after natural reproduction.

Epigenetics:

The study of inherited changes in phenotype or gene expression caused by mechanisms other than changes in the DNA sequence.

Genetic engineering:

Development of a new plant variety through genetic modification by using recombinant DNA technology.

Phenotype:

Observable trait or characteristic (i.e., appearance) of an organism in a specific environment.

Phenome:

Collection of phenotypes of an organism in all possible environments.

Phenotyping:

Process of studying the phenotype.

Plant productivity:

Ability of a plant to produce a certain amount of biomass, either as green tissue and/or as seeds (yield).

Quantitative trait locus (QTL):

Stretches of DNA that are closely linked to the genes that underlie the trait in question.

Regulon biotechnology:

Genetic engineering by targeting genes encoding proteins with regulatory function, often transcription factors.

Trait:

Characteristic of an object.

Bibliography

  1. Fedoroff NV, Battisti DS, Beachy RN, Cooper PJ, Fischhoff DA, Hodges CN, Knauf VC, Lobell D, Mazur BJ, Molden D, Reynolds MP, Ronald PC, Rosegrant MW, Sanchez PA, Vonshak A, Zhu JK (2010) Radically rethinking agriculture for the 21st century. Science 327:833–834

    Article  PubMed  CAS  Google Scholar 

  2. Buchanan BB, Gruissem W, Jones RL (eds) (2000) Biochemistry and molecular biology of plants. American Society of Plant Physiologists, Rockville

    Google Scholar 

  3. Ribaut JM, Ragot M (2007) Marker-assisted selection to improve drought adaptation in maize: the backcross approach, perspectives, limitations, and alternatives. J Exp Bot 58:351–360

    Article  PubMed  CAS  Google Scholar 

  4. Sreenivasulu N, Sopory SK, Kavi Kishor PB (2007) Deciphering the regulatory mechanisms of abiotic stress tolerance in plants by genomic approaches. Gene 388:1–13

    Article  PubMed  CAS  Google Scholar 

  5. Witcombe JR, Hollington PA, Howarth CJ, Reader S, Steele KA (2008) Breeding for abiotic stresses for sustainable agriculture. Philos Trans R Soc Lond B Biol Sci 363:703–716

    Article  PubMed  CAS  Google Scholar 

  6. Vij S, Tyagi AK (2007) Emerging trends in the functional genomics of the abiotic stress response in crop plants. Plant Biotechnol J 5:361–380

    Article  PubMed  CAS  Google Scholar 

  7. Bhatnagar-Mathur P, Vadez V, Sharma KK (2008) Transgenic approaches for abiotic stress tolerance in plants: retrospect and prospects. Plant Cell Rep 27:411–424

    Article  PubMed  CAS  Google Scholar 

  8. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58:221–227

    Article  PubMed  CAS  Google Scholar 

  9. Divya K, Jami SK, Kirti PB (2010) Constitutive expression of mustard annexin, AnnBj1 enhances abiotic stress tolerance and fiber quality in cotton under stress. Plant Mol Biol 73:293–308

    Article  PubMed  CAS  Google Scholar 

  10. Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 55:373–399

    Article  PubMed  CAS  Google Scholar 

  11. Laloi C, Apel K, Danon A (2004) Reactive oxygen signalling: the latest news. Curr Opin Plant Biol 7:323–328

    Article  PubMed  CAS  Google Scholar 

  12. Halliwell B (2006) Reactive species and antioxidants Redox biology is a fundamental theme of aerobic life. Plant Physiol 141:312–322

    Article  PubMed  CAS  Google Scholar 

  13. Van Breusegem F, Dat JF (2006) Reactive oxygen species in plant cell death. Plant Physiol 141:384–390

    Article  PubMed  CAS  Google Scholar 

  14. Badawi GH, Kawano N, Yamauchi Y, Shimada E, Sasaki R, Kubo A, Tanaka K (2004) Over-expression of ascorbate peroxidase in tobacco chloroplasts enhances the tolerance to salt stress and water deficit. Physiol Plant 121:231–238

    Article  PubMed  CAS  Google Scholar 

  15. Basu U, Good AG, Taylor GJ (2001) Transgenic Brassica napus plants overexpressing aluminium- induced mitochondrial manganese superoxide dismutase cDNA are resistant to aluminium. Plant Cell Environ 24:1269–1278

    Article  CAS  Google Scholar 

  16. Gaber A, Yoshimura K, Yamamoto T, Yabuta Y, Takeda T, Miyasaka H, Nakano Y, Shigeoka S (2006) Glutathione peroxidase-like protein of Synechocystis PCC 6803 confers tolerance to oxidative and environmental stresses in transgenic Arabidopsis. Physiol Plant 128:251–262

    Article  CAS  Google Scholar 

  17. Gong H, Jiao Y, Hu WW, Pua EC (2005) Expression of glutathione-S-transferase and its role in plant growth and development in vivo and shoot morphogenesis in vitro. Plant Mol Biol 57:53–66

    Article  PubMed  CAS  Google Scholar 

  18. Yoshimura K, Miyao K, Gaber A, Takeda T, Kanaboshi H, Miyasaka H, Shigeoka S (2004) Enhancement of stress tolerance in transgenic tobacco plants overexpressing Chlamydomonas glutathione peroxidase in chloroplasts or cytosol. Plant J 37:21–33

    Article  PubMed  CAS  Google Scholar 

  19. Murgia I, Tarantino D, Vannini C, Bracale M, Carravieri S, Soave C (2004) Arabidopsis thaliana plants overexpressing thylakoidal ascorbate peroxidase show increased resistance to Paraquat-induced photooxidative stress and to nitric oxide-induced cell death. Plant J 38:940–953

    Article  PubMed  CAS  Google Scholar 

  20. Oberschall A, Deák M, Török K, Sass L, Vass I, Kovács I, Fehér A, Dudits D, Horváth GV (2000) A novel aldose/aldehyde reductase protects transgenic plants against lipid peroxidation under chemical and drought stresses. Plant J 24:437–446

    Article  PubMed  CAS  Google Scholar 

  21. Sunkar R, Kapoor A, Zhu JK (2006) Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18:2051–2065

    Article  PubMed  CAS  Google Scholar 

  22. Yamamoto A, Bhuiyan MN, Waditee R, Tanaka Y, Esaka M, Oba K, Jagendorf AT, Takabe T (2005) Suppressed expression of the apoplastic ascorbate oxidase gene increases salt tolerance in tobacco and Arabidopsis plants. J Exp Bot 56:1785–1796

    Article  PubMed  CAS  Google Scholar 

  23. Zhao F, Zhang H (2006) Expression of Suaeda salsa glutathione S-transferase in transgenic rice resulted in a different level of abiotic stress resistance. J Agric Sci 144:547–554

    Article  CAS  Google Scholar 

  24. Kornyeyev D, Logan BA, Payton P, Allen RD, Holaday AS (2001) Enhanced photochemical light utilization and decreased chilling-induced photoinhibition of photosystem II in cotton overexpressing genes encoding chloroplast-targeted antioxidant enzymes. Physiol Plant 113:323–331

    Article  PubMed  CAS  Google Scholar 

  25. Matsumura T, Tabayashi N, Kamagata Y, Souma C, Saruyama H (2002) Wheat catalase expressed in transgenic rice can improve tolerance against low temperature stress. Physiol Plant 116:317–327

    Article  CAS  Google Scholar 

  26. Wang FZ, Wang QB, Kwon SY, Kwak SS, Su WA (2005) Enhanced drought tolerance of transgenic rice plants expressing a pea manganese superoxide dismutase. J Plant Physiol 162:465–472

    Article  PubMed  CAS  Google Scholar 

  27. Lee SH, Ahsan N, Lee KW, Kim DH, Lee DG, Kwak SS, Kwon SY, Kim TH, Lee BH (2007) Simultaneous overexpression of both CuZn superoxide dismutase and ascorbate peroxidase in transgenic tall fescue plants confers increased tolerance to a wide range of abiotic stresses. J Plant Physiol 164:1626–1638

    Article  PubMed  CAS  Google Scholar 

  28. Prashanth SR, Sadhasivam V, Parida A (2008) Over expression of cytosolic copper/zinc superoxide dismutase from a mangrove plant Avicennia marina in indica rice var Pusa Basmati-1 confers abiotic stress tolerance. Transgenic Res 17:281–291

    Article  PubMed  CAS  Google Scholar 

  29. Huang W, Ma X, Wang Q, Gao Y, Xue Y, Niu X, Yu G, Liu Y (2008) Significant improvement of stress tolerance in tobacco plants by overexpressing a stress-responsive aldehyde dehydrogenase gene from maize (Zea mays). Plant Mol Biol 68:451–463

    Article  PubMed  CAS  Google Scholar 

  30. Xue T, Li X, Zhu W, Wu C, Yang G, Zheng C (2009) Cotton metallothionein GhMT3a, a reactive oxygen species scavenger, increased tolerance against abiotic stress in transgenic tobacco and yeast. J Exp Bot 60:339–349

    Article  PubMed  CAS  Google Scholar 

  31. Van Aken O, Giraud E, Clifton R, Whelan J (2009) Alternative oxidase: a target and regulator of stress responses. Physiol Plant 137:354–361

    Article  PubMed  CAS  Google Scholar 

  32. Zhang Y, Xi D, Wang J, Zhu D, Guo X (2009) Functional analysis reveals effects of tobacco alternative oxidase gene (NtAOX1a) on regulation of defence responses against abiotic and biotic stresses. Biosci Rep 29:375–383

    Article  PubMed  CAS  Google Scholar 

  33. Wang W, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heat shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9:244–252

    Article  PubMed  CAS  Google Scholar 

  34. Katiyar-Agarwal S, Agarwal M, Grover A (2003) Heat-tolerant basmati rice engineered by over-expression of hsp101. Plant Mol Biol 51:677–686

    Article  PubMed  CAS  Google Scholar 

  35. Guo S-J, Zhou H-Y, Zhang XS, Li X-G, Meng Q-W (2007) Overexpression of CaHSP26 in transgenic tobacco alleviates photoinhibition of PSII and PSI during chilling stress under low irradiance. J Plant Physiol 164:126–136

    Article  PubMed  CAS  Google Scholar 

  36. Hong S-W, Vierling E (2000) Mutants of Arabidopsis thaliana defective in the acquisition of tolerance to high temperature stress. Proc Natl Acad Sci USA 97:4392–4397

    Article  PubMed  CAS  Google Scholar 

  37. Lee JH, Schöffl F (1996) An Hsp70 antisense gene affects the expression of HSP70/HSC70, the regulation of HSF, and the acquisition of thermotolerance in transgenic Arabidopsis thaliana. Mol Gen Genet 252:11–19

    PubMed  CAS  Google Scholar 

  38. Malik MK, Slovin JP, Hwang CH, Zimmerman JL (1999) Modified expression of a carrot small heat shock protein gene, hsp17. 7, results in increased or decreased thermotolerance. Plant J 20:89–99

    Article  PubMed  CAS  Google Scholar 

  39. Park SM, Hong CB (2002) Class I small heat-shock protein gives thermotolerance in tobacco. J Plant Physiol 159:25–30

    Article  CAS  Google Scholar 

  40. Queitsch C, Hong SW, Vierling E, Lindquist S (2000) Heat shock protein 101 plays a crucial role in thermotolerance in Arabidopsis. Plant Cell 12:479–492

    PubMed  CAS  Google Scholar 

  41. Rhoads DM, White SJ, Zhou Y, Muralidharan M, Elthon TE (2005) Altered gene expression in plants with constitutive expression of a mitochondrial small heat shock protein suggests the involvement of retrograde regulation in the heat stress response. Physiol Plant 123:435–444

    Article  CAS  Google Scholar 

  42. Yang JY, Sun Y, Sun AQ, Yi SY, Qin J, Li MH, Liu J (2006) The involvement of chloroplast HSP100/ClpB in the acquired thermotolerance in tomato. Plant Mol Biol 62:385–395

    Article  PubMed  CAS  Google Scholar 

  43. Maqbool A, Abbas W, Rao AQ, Irfan M, Zahur M, Bakhsh A, Riazuddin S, Husnain T (2010) Gossypium arboreum GHSP26 enhances drought tolerance in Gossypium hirsutum. Biotechnol Prog 26:21–25

    PubMed  CAS  Google Scholar 

  44. Wang W, Vinocur B, Altman A (2003) Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance. Planta 218:1–14

    Article  PubMed  CAS  Google Scholar 

  45. Shinozaki K, Yamaguchi-Shinozaki K (2000) Molecular response to dehydration and low temperature: Differences and cross-talk between two stress signaling pathways. Curr Opin Plant Biol 3:217–223

    PubMed  CAS  Google Scholar 

  46. Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53:247–273

    Article  PubMed  CAS  Google Scholar 

  47. Thomashow MF (1998) Role of cold-responsive genes in plant freezing tolerance. Plant Physiol 118:1–8

    Article  PubMed  CAS  Google Scholar 

  48. Thomashow MF (1999) Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Annu Rev Plant Physiol Plant Mol Biol 50:571–599

    Article  PubMed  CAS  Google Scholar 

  49. Xiao B, Huang Y, Tang N, Xiong L (2007) Over-expression of a LEA gene in rice improves drought resistance under the field conditions. Theor Appl Genet 115:35–46

    Article  PubMed  CAS  Google Scholar 

  50. Delauney AJ, Verma DPS (1993) Proline biosynthesis and osmoregulation in plants. Plant J 4:215–223

    Article  CAS  Google Scholar 

  51. Tarczynski MC, Jensen RG, Bohnert HJ (1993) Stress protection of transgenic tobacco by production of the osmolyte mannitol. Science 259:508–510

    Article  PubMed  CAS  Google Scholar 

  52. Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ (2000) Plant cellular and molecular responses to high salinity. Annu Rev Plant Physiol Plant Mol Biol 51:463–499

    Article  PubMed  CAS  Google Scholar 

  53. Vinocur B, Altman A (2005) Recent advances in engineering plant tolerance to abiotic stress: achievements and limitation. Curr Opin Biotechnol 16:123–132

    Article  PubMed  CAS  Google Scholar 

  54. Kathuria H, Giri J, Nataraja KN, Murata N, Udayakumar M, Tyagi AK (2009) Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice is associated with up-regulation of several stress responsive genes. Plant Biotechnol J 7:512–526

    Article  PubMed  CAS  Google Scholar 

  55. Jang IC, Oh SJ, Seo JS, Choi WB, Song SI, Kim CH, Kim YS, Seo HS, Choi YD, Nahm BH, Kim JK (2003) Expression of a bifunctional fusion of the Escherichia coli genes for trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase in transgenic rice plants increases trehalose accumulation and abiotic stress tolerance without stunting growth. Plant Physiol 131:516–524

    Article  PubMed  CAS  Google Scholar 

  56. Garg AK, Kim J-K, Owens TG, Ranwala AP, Choi YD, Kochian LV, Wu RJ (2002) Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc Natl Acad Sci USA 99:15898–15903

    Article  PubMed  CAS  Google Scholar 

  57. Quan R, Shang M, Zhang H, Zhao Y, Zhang J (2004) Engineering of enhanced glycine betaine synthesis improves drought tolerance in maize. Plant Biotechnol J 2:477–486

    Article  PubMed  CAS  Google Scholar 

  58. Park EJ, Jeknić Z, Pino MT, Murata N, Chen TH (2007) Glycinebetaine accumulation is more effective in chloroplasts than in the cytosol for protecting transgenic tomato plants against abiotic stress. Plant Cell Environ 30:994–1005

    Article  PubMed  CAS  Google Scholar 

  59. Abebe T, Guenzi AC, Martin B, Cushman JC (2003) Tolerance of mannitol-accumulating transgenic wheat to water stress and salinity. Plant Physiol 131:1748–1755

    Article  PubMed  CAS  Google Scholar 

  60. Vendruscolo EC, Schuster I, Pileggi M, Scapim CA, Molinari HB, Marur CJ, Vieira LG (2007) Stress-induced synthesis of proline confers tolerance to water deficit in transgenic wheat. J Plant Physiol 164:1367–1376

    Article  PubMed  CAS  Google Scholar 

  61. Shirasawa K, Takabe T, Takabe T, Kishitani S (2006) Accumulation of glycinebetaine in rice plants that overexpress choline monooxygenase from spinach and evaluation of their tolerance to abiotic stress. Ann Bot 98:565–571

    Article  PubMed  CAS  Google Scholar 

  62. Diamant S, Eliahu N, Rosenthal D, Goloubinoff P (2001) Chemical chaperones regulate molecular chaperones in vitro and in cells under combined salt and heat stresses. J Biol Chem 276:39586–39591

    Article  PubMed  CAS  Google Scholar 

  63. Hare PD, Cress WA, Van Staden J (1998) Dissecting the roles of osmolyte accumulation during stress. Plant Cell Environ 21:535–553

    Article  CAS  Google Scholar 

  64. Tuteja N (2007) Mechanisms of high salinity tolerance in plants. Methods Enzymol 428:419–438

    Article  PubMed  CAS  Google Scholar 

  65. Obata T, Kitamoto HK, Nakamura A, Fukuda A, Tanaka Y (2007) Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells. Plant Physiol 144:1978–1985

    Article  PubMed  CAS  Google Scholar 

  66. Fukuda A, Chiba K, Maeda M, Nakamura A, Maeshima M, Tanaka Y (2004) Effect of salt and osmotic stresses on the expression of genes for the vacuolar H + -pyrophosphatase, H + -ATPase subunit A, and Na+/H + antiporter from barley. J Exp Bot 55:585–594

    Article  PubMed  CAS  Google Scholar 

  67. Laurie S, Feeney KA, Maathuis FJ, Heard PJ, Brown SJ, Leigh RA (2002) A role for HKT1 in sodium uptake by wheat roots. Plant J 32:139–149

    Article  PubMed  CAS  Google Scholar 

  68. Chung JS, Zhu JK, Bressan RA, Hasegawa PM, Shi H (2008) Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis. Plant J 53:554–565

    Article  PubMed  CAS  Google Scholar 

  69. Lian HL, Yu X, Ye Q, Ding X, Kitagawa Y, Kwak SS, Su WA, Tang ZC (2004) The role of aquaporin RWC3 in drought avoidance in rice. Plant Cell Physiol 45:481–489

    Article  PubMed  CAS  Google Scholar 

  70. Pereira JF, Zhou G, Delhaize E, Richardson T, Zhou M, Ryan PR (2010) Engineering greater aluminium resistance in wheat by over-expressing TaALMT1. Ann Bot 106:205–214

    Google Scholar 

  71. Sasaki T, Yamamoto Y, Ezaki B, Katsuhara M, Ahn SJ, Ryan PR, Delhaize E, Matsumoto H (2004) A wheat gene encoding an aluminum-activated malate transporter. Plant J 37:645–653

    Article  PubMed  CAS  Google Scholar 

  72. Delhaize E, Ryan PR, Hebb DM, Yamamoto Y, Sasaki T, Matsumoto H (2004) Engineering high-level aluminum tolerance in barley with the ALMT1 gene. Proc Natl Acad Sci USA 101:15249–15254

    Article  PubMed  CAS  Google Scholar 

  73. Ariizumi T, Kishitani S, Inatsugi R, Nishida I, Murata N, Toriyama K (2002) An increase in unsaturation of fatty acids in phosphatidylglycerol from leaves improves the rates of photosynthesis and growth at low temperatures in transgenic rice seedlings. Plant Cell Physiol 43:751–758

    Article  PubMed  CAS  Google Scholar 

  74. Khodakovskaya M, McAvoy R, Peters J, Wu H, Li Y (2006) Enhanced cold tolerance in transgenic tobacco expressing a chloroplast omega-3 fatty acid desaturase gene under the control of a cold-inducible promoter. Planta 223:1090–1100

    Article  PubMed  CAS  Google Scholar 

  75. Orlova IV, Serebriiskaya TS, Popov V, Merkulova N, Nosov AM, Trunova TI, Tsydendambaev VD, Los DA (2003) Transformation of tobacco with a gene for the thermophilic acyl-lipid desaturase enhances the chilling tolerance of plants. Plant Cell Physiol 44:447–450

    Article  PubMed  CAS  Google Scholar 

  76. Sui N, Li M, Zhao SJ, Li F, Liang H, Meng QW (2007) Overexpression of glycerol-3-phosphate acyltransferase gene improves chilling tolerance in tomato. Planta 226:1097–1108

    Article  PubMed  CAS  Google Scholar 

  77. Zhang M, Barg R, Yin M, Gueta-Dahan Y, Leikin-Frenkel A, Salts Y, Shabtai S, Ben-Hayyim G (2005) Modulated fatty acid desaturation via overexpression of two distinct ω-3 desaturases differentially alters tolerance to various abiotic stresses in transgenic tobacco cells and plants. Plant J 44:361–371

    Article  PubMed  CAS  Google Scholar 

  78. Sohn SO, Back K (2007) Transgenic rice tolerant to high temperature with elevated contents of dienoic fatty acids. Biol Plant 51:340–342

    Article  CAS  Google Scholar 

  79. Osakabe Y, Mizuno S, Tanaka H, Maruyama K, Osakabe K, Todaka D, Fujita Y, Kobayashi M, Shinozaki K, Yamaguchi-Shinozaki K (2010) Overproduction of the membrane-bound receptor-like protein kinase 1, RPK1, enhances abiotic stress tolerance in Arabidopsis. J Biol Chem 285:9190–9201

    Article  PubMed  CAS  Google Scholar 

  80. Yang L, Ji W, Zhu Y, Gao P, Li Y, Cai H, Bai X, Guo D (2010). GsCBRLK, a calcium/calmodulin-binding receptor-like kinase, is a positive regulator of plant tolerance to salt and ABA stress. J Exp Bot 61:2519–2533

    Google Scholar 

  81. Ouyang SQ, Liu YF, Liu P, Lei G, He SJ, Ma B, Zhang WK, Zhang JS, Chen SY (2010) Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants. Plant J 62:316–329

    Article  PubMed  CAS  Google Scholar 

  82. Raghavendra AS, Gonugunta VK, Christmann A, Grill E (2010) ABA perception and signaling. Trends Plant Sci 15:395–401

    Google Scholar 

  83. Melcher K, Ng LM, Zhou XE, Soon FF, Xu Y, Suino-Powell KM, Park SY, Weiner JJ, Fujii H, Chinnusamy V, Kovach A, Li J, Wang Y, Li J, Peterson FC, Jensen DR, Yong EL, Volkman BF, Cutler SR, Zhu JK, Xu HE (2009) A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature 462:602–608

    Article  PubMed  CAS  Google Scholar 

  84. Santiago J, Dupeux F, Round A, Antoni R, Park SY, Jamin M, Cutler SR, Rodriguez PL, Márquez JA (2009) The abscisic acid receptor PYR1 in complex with abscisic acid. Nature 462:665–668

    Article  PubMed  CAS  Google Scholar 

  85. Koh S, Lee SC, Kim MK, Koh JH, Lee S, An G, Choe S, Kim SR (2007) T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses. Plant Mol Biol 65:453–466

    Article  PubMed  CAS  Google Scholar 

  86. Diédhiou CJ, Popova OV, Dietz KJ, Golldack D (2008) The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biol 28(8):49

    Article  CAS  Google Scholar 

  87. Saijo Y, Hata S, Kyozuka J, Shimamoto K, Izui K (2000) Over-expression of a single Ca2 + -dependent protein kinase confers both cold and salt/drought tolerance on rice plants. Plant J 23:319–327

    Article  PubMed  CAS  Google Scholar 

  88. Xiang Y, Huang Y, Xiong L (2007) Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement. Plant Physiol 144:1416–1428

    Article  PubMed  CAS  Google Scholar 

  89. Shou H, Bordallo P, Wang K (2004) Expression of the Nicotiana protein kinase (NPK1) enhanced drought tolerance in transgenic maize. J Exp Bot 55:1013–1019

    Article  PubMed  CAS  Google Scholar 

  90. Agarwal PK, Agarwal P, Jain P, Jha B, Reddy MK, Sopory SK (2008) Constitutive overexpression of a stress-inducible small GTP-binding protein PgRab7 from Pennisetum glaucum enhances abiotic stress tolerance in transgenic tobacco. Plant Cell Rep 27:105–115

    Article  PubMed  CAS  Google Scholar 

  91. Seki M, Kamei A, Yamaguchi-Shinozaki K, Shinozaki K (2003) Molecular responses to drought, salinity and frost: common and different paths for plant protection. Curr Opin Biotechnol 14:194–199

    Article  PubMed  CAS  Google Scholar 

  92. Shinozaki K, Yamaguchi-Shinozaki K, Seki M (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol 6:410–417

    Article  PubMed  CAS  Google Scholar 

  93. Nakashima K, Yamaguchi-Shinozaki K (2005) Molecular studies on stress-responsive gene expression in Arabidopsis and improvement of stress tolerance in crop plants by regulon biotechnology. Jpn Agr Res Q 39:221–229

    CAS  Google Scholar 

  94. Umezawa T, Fujita M, Fujita Y, Yamaguchi-Shinozaki K, Shinozaki K (2006) Engineering drought tolerance in plants: discovering and tailoring genes to unlock the future. Curr Opin Biotechnol 17:113–122

    Article  PubMed  CAS  Google Scholar 

  95. Agarwal PK, Agarwal P, Reddy MK, Sopory SK (2006) Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep 25:1263–1274

    Article  PubMed  CAS  Google Scholar 

  96. Yamaguchi-Shinozaki K, Shinozaki K (2006) Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 57:781–803

    Article  PubMed  CAS  Google Scholar 

  97. Ito Y, Katsura K, Maruyama K, Taji T, Kobayashi M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2006) Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. Plant Cell Physiol 47:141–153

    Article  PubMed  CAS  Google Scholar 

  98. Savitch LV, Allard G, Seki M, Robert LS, Tinker NA, Huner NP, Shinozaki K, Singh J (2005) The effect of overexpression of two Brassica CBF/DREB1-like transcription factors on photosynthetic capacity and freezing tolerance in Brassica napus. Plant Cell Physiol 46:1525–1539

    Article  PubMed  CAS  Google Scholar 

  99. Nelson DE, Repetti PP, Adams TR, Creelman RA, Wu J, Warner DC, Anstrom DC, Bensen RJ, Castiglioni PP, Donnarummo MG, Hinchey BS, Kumimoto RW, Maszle DR, Canales RD, Krolikowski KA, Dotson SB, Gutterson N, Ratcliffe OJ, Heard JE (2007) Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres. Proc Natl Acad Sci USA 104:16450–16455

    Article  PubMed  CAS  Google Scholar 

  100. Lee HE, Shin D, Park SR, Han SE, Jeong MJ, Kwon TR, Lee SK, Park SC, Yi BY, Kwon HB, Byun MO (2007) Ethylene responsive element binding protein 1 (StEREBP1) from Solanum tuberosum increases tolerance to abiotic stress in transgenic potato plants. Biochem Biophys Res Commun 353:863–868

    Article  PubMed  CAS  Google Scholar 

  101. Zhang G, Chen M, Li L, Xu Z, Chen X, Guo J, Ma Y (2009) Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco. J Exp Bot 60:3781–3796

    Article  PubMed  CAS  Google Scholar 

  102. Karaba A, Dixit S, Greco R, Aharoni A, Trijatmiko KR, Marsch-Martinez N, Krishnan A, Nataraja KN, Udayakumar M, Pereira A (2007) Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene. Proc Natl Acad Sci USA 104:15270–15275

    Article  PubMed  CAS  Google Scholar 

  103. Gao S, Zhang H, Tian Y, Li F, Zhang Z, Lu X, Chen X, Huang R (2008) Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity. Plant Cell Rep 27:1787–1795

    Article  PubMed  CAS  Google Scholar 

  104. Xiang Y, Tang N, Du H, Ye H, Xiong L (2008) Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiol 148:1938–1952

    Article  PubMed  CAS  Google Scholar 

  105. Huang J, Sun SJ, Xu DQ, Yang X, Bao YM, Wang ZF, Tang HJ, Zhang H (2009) Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245. Biochem Biophys Res Commun 389:556–561

    Article  PubMed  CAS  Google Scholar 

  106. Ye H, Du H, Tang N, Li X, Xiong L (2009) Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice. Plant Mol Biol 71:291–305

    Article  PubMed  CAS  Google Scholar 

  107. Ma Q, Dai X, Xu Y, Guo J, Liu Y, Chen N, Xiao J, Zhang D, Xu Z, Zhang X, Chong K (2009) Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes. Plant Physiol 150:244–256

    Article  PubMed  CAS  Google Scholar 

  108. Ogo Y, Itai RN, Nakanishi H, Kobayashi T, Takahashi M, Mori S, Nishizawa NK (2007) The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. Plant J 51:366–377

    Article  PubMed  CAS  Google Scholar 

  109. Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki K (2007) Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J 51:617–630

    Article  PubMed  CAS  Google Scholar 

  110. Yi SY, Kim JH, Joung YH, Lee S, Kim WT, Yu SH, Choi D (2004) The pepper transcription factor CaPF1 confers pathogen and freezing tolerance in Arabidopsis. Plant Physiol 136:2862–2874

    Article  PubMed  CAS  Google Scholar 

  111. Hu H, Dai M, Yao J, Xiao B, Li X, Zhang Q, Xiong L (2006) Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc Natl Acad Sci USA 103:12987–12992

    Article  PubMed  CAS  Google Scholar 

  112. Huang XY, Chao DY, Gao JP, Zhu MZ, Shi M, Lin HX (2009) A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control. Genes Dev 23:1805–1817

    Article  PubMed  CAS  Google Scholar 

  113. Vannini C, Campa M, Iriti M, Genga A, Faoro F, Carravieri S, Rotino GL, Rossoni M, Spinardi AM (2007) Evaluation of transgenic tomato plants ectopically expressing the rice Osmyb4 gene. Plant Sci 173:231–239

    Article  CAS  Google Scholar 

  114. Seong ES, Baek K-H, Oh S-K, Jo SH, Yi SY, Park JM, Joung YH, Lee S, Cho HS, Choi D (2007) Induction of enhanced tolerance to cold stress and disease by overexpression of the pepper CaPIF1 gene in tomato. Physiol Plant 129:555–566

    Article  CAS  Google Scholar 

  115. Hsieh TH, Li CW, Su RC, Cheng CP, Sanjaya TYC, Chan MT (2010) A tomato bZIP transcription factor, SlAREB, is involved in water deficit and salt stress response. Planta 231:1459–1473

    Article  PubMed  CAS  Google Scholar 

  116. Guo YH, Yu YP, Wang D, Wu CA, Yang GD, Huang JG, Zheng CC (2009) GhZFP1, a novel CCCH-type zinc finger protein from cotton, enhances salt stress tolerance and fungal disease resistance in transgenic tobacco by interacting with GZIRD21A and GZIPR5. New Phytol 183:62–75

    Article  PubMed  CAS  Google Scholar 

  117. Huang J, Wang MM, Jiang Y, Bao YM, Huang X, Sun H, Xu DQ, Lan HX, Zhang HS (2008) Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance. Gene 420:135–144

    Article  PubMed  CAS  Google Scholar 

  118. Shukla LI, Chinnusamy V, Sunkar R (2008) The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim Biophys Acta 1779:743–748

    Article  PubMed  CAS  Google Scholar 

  119. Mittler R, Feng X, Cohen M (1998) Post-transcriptional suppression of cytosolic ascorbate peroxidase expression during pathogen-induced programmed cell death in tobacco. Plant Cell 10:461–473

    PubMed  CAS  Google Scholar 

  120. Mittler R, Zilinskas BA (1994) Regulation of pea cytosolic ascorbate peroxidase and other antioxidant enzymes during the progression of drought stress and following recovery from drought. Plant J 5:397–405

    Article  PubMed  CAS  Google Scholar 

  121. Forment J, Naranjo MA, Roldán M, Serrano R, Vicente O (2002) Expression of Arabidopsis SR-like splicing proteins confers salt tolerance to yeast and transgenic plants. Plant J 30:511–519

    Article  PubMed  CAS  Google Scholar 

  122. Kant P, Kant S, Gordon M, Shaked R, Barak S (2007) STRESS RESPONSE SUPPRESSOR1 and STRESS RESPONSE SUPPRESSOR2, two DEAD-box RNA helicases that attenuate Arabidopsis responses to multiple abiotic stresses. Plant Physiol 145:814–830

    Article  PubMed  CAS  Google Scholar 

  123. Gong Z, Dong CH, Lee H, Zhu J, Xiong L, Gong D, Stevenson B, Zhu JK (2005) A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell 17:256–267

    Article  PubMed  CAS  Google Scholar 

  124. Kim YO, Kim JS, Kang H (2005) Cold-inducible zinc finger-containing glycine-rich RNA-binding protein contributes to the enhancement of freezing tolerance in Arabidopsis thaliana. Plant J 42:890–900

    Article  PubMed  CAS  Google Scholar 

  125. Kim YO, Pan S, Jung C-H, Kang H (2007) A zinc finger-containing glycine-rich RNA-binding protein, at RZ-1a, has a negative impact on seed germination and seedling growth of Arabidopsis thaliana under salt or drought stress conditions. Plant Cell Physiol 48:1170–1181

    Article  PubMed  CAS  Google Scholar 

  126. Romero C, Belles JM, Vaya JL, Serrano R, Culianez-Macia FA (1997) Expression of the yeast trehalose-6-phosphate synthase gene in transgenic tobacco plants: pleiotropic phenotypes include drought tolerance. Planta 201:293–297

    Article  PubMed  CAS  Google Scholar 

  127. Zhang Y, Yang C, Li Y, Zheng N, Chen H, Zhao Q, Gao T, Guo H, Xie Q (2007) SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis. Plant Cell 19:1912–1929

    Article  PubMed  CAS  Google Scholar 

  128. Zhang YY, Li Y, Gao T, Zhu H, Wang DJ, Zhang HW, Ning YS, Liu LJ, Wu YR, Chu CC, Guo HS, Xie Q (2008) Arabidopsis SDIR1 enhances drought tolerance in crop plants. Biosci Biotechnol Biochem 72:2251–2254

    Article  PubMed  CAS  Google Scholar 

  129. Guo X, Wu Y, Wang Y, Chen Y, Chu C (2009) OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses. Planta 230:227–238

    Article  PubMed  CAS  Google Scholar 

  130. Wang Y, Ying J, Kuzma M, Chalifoux M, Sample A, McArthur C, Uchacz T, Sarvas C, Wan J, Dennis DT, McCourt P, Huang Y (2005) Molecular tailoring of farnesylation for plant drought tolerance and yield protection. Plant J 43:413–424

    Article  PubMed  CAS  Google Scholar 

  131. De Block M, Verduyn C, De Brouwer D, Cornelissen M (2005) Poly(ADP-ribose) polymerase in plants affects energy homeostasis, cell death and stress tolerance. Plant J 41:95–106

    Article  PubMed  CAS  Google Scholar 

  132. Vanderauwera S, De Block M, Van de Steene N, van de Cotte B, Metzlaff M, Van Breusegem F (2007) Silencing of poly(ADP-ribose) polymerase in plants alters abiotic stress signal transduction. Proc Natl Acad Sci USA 104:15150–15155

    Article  PubMed  CAS  Google Scholar 

  133. Hauben M, Haesendonckx B, Standaert E, Van Der Kelen K, Azmi A, Akpo H, Van Breusegem F, Guisez Y, Bots M, Lambert B, Laga B, De Block M (2009) Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield. Proc Natl Acad Sci USA 106:20109–20114

    PubMed  CAS  Google Scholar 

  134. Mittler R, Blumwald E (2010) Genetic engineering for modern agriculture: challenges and perspectives. Annu Rev Plant Biol 61:443–462

    Article  PubMed  CAS  Google Scholar 

  135. Yamaguchi T, Blumwald E (2005) Developing salt-tolerant crop plants: challenges and opportunities. Trends Plant Sci 10:615–620

    Article  PubMed  CAS  Google Scholar 

  136. Mittler R (2006) Abiotic stress, the field environment and stress combination. Trends Plant Sci 11:15–19

    Article  PubMed  CAS  Google Scholar 

  137. Pino MT, Skinner JS, Park EJ, Jeknić Z, Hayes PM, Thomashow MF, Chen TH (2007) Use of a stress inducible promoter to drive ectopic AtCBF expression improves potato freezing tolerance while minimizing negative effects on tuber yield. Plant Biotechnol J 5:591–604

    Article  PubMed  CAS  Google Scholar 

  138. Massonet C, Vile D, Fabre J, Hannah MA, Caldana C, Lisec J, Beemster GT, Meyer RC, Messerli G, Gronlund JT, Perkovic J, Wigmore E, May S, Bevan MW, Meyer C, Rubio-Diaz S, Weigel D, Micol JL, Buchanan-Wollaston V, Fiorani F, Walsh S, Rinn B, Gruissem W, Hilson P, Hennig L, Willmitzer L, Granier C (2010) Plant Physiol 152:2142–2157

    Article  CAS  Google Scholar 

  139. Verslues PE, Agarwal M, Katiyar-Agarwal S, Zhu J, Zhu JK (2006) Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status. Plant J 45:523–539

    Article  PubMed  CAS  Google Scholar 

  140. Salekdeh GH, Reynolds M, Bennett J, Boyer J (2009) Conceptual framework for drought phenotyping during molecular breeding. Trends Plant Sci 14:488–496

    Article  PubMed  CAS  Google Scholar 

  141. Kolukisaoglu Ü, Thurow K (2010) Future and frontiers of automated screening in plant sciences. Plant Sci 178:476–484

    Article  CAS  Google Scholar 

  142. Urano K, Kurihara Y, Seki M, Shinozaki K (2010) ‘Omics’ analyses of regulatory networks in plant abiotic stress responses. Curr Opin Plant Biol 13:132–138

    Article  PubMed  CAS  Google Scholar 

  143. Mochida K, Shinozaki K (2010) Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol 51:497–523

    Article  PubMed  CAS  Google Scholar 

  144. Finkel E (2009) Imaging. With ‘phenomics’, plant scientists hope to shift breeding into overdrive. Science 325:380–381

    Article  PubMed  CAS  Google Scholar 

  145. Saint Pierre C, Crossa J, Manes Y, Reynolds MP (2010) Gene action of canopy temperature in bread wheat under diverse environments. Theor Appl Genet 120:1107–1117

    Article  PubMed  Google Scholar 

  146. Granier C, Aguirrezabal L, Chenu K, Cookson SJ, Dauzat M, Hamard P, Thioux JJ, Rolland G, Bouchier-Combaud S, Lebaudy A, Muller B, Simonneau T, Tardieu F (2006) PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit. New Phytol 169:623–635

    Article  PubMed  Google Scholar 

  147. Sadok W, Naudin P, Boussuge B, Muller B, Welcker C, Tardieu F (2007) Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions. Plant Cell Environ 30:135–146

    Article  PubMed  Google Scholar 

  148. Walter A, Scharr H, Gilmer F, Zierer R, Nagel KA, Ernst M, Wiese A, Virnich O, Christ MM, Uhlig B, Jünger S, Schurr U (2007) Dynamics of seedling growth acclimation towards altered light conditions can be quantified via GROWSCREEN: a setup and procedure designed for rapid optical phenotyping of different plant species. New Phytol 174:447–455

    Article  PubMed  Google Scholar 

  149. Reuzeau C, Pen J, Frankard V, de Wolf J, Peerbolte R, Broekaert W, van Camp W (2005) TraitMill: a discovery engine for identifying yield-enhancement genes in cereals. Mol Plant Breed 3:753–759

    CAS  Google Scholar 

  150. Gregory PJ, Hutchison DJ, Read DB, Jenneson PM, Gilboy WB, Morton EJ (2003) Non-invasive imaging of roots with high resolution X-ray micro-tomography. Plant Soil 255:351–359

    Article  CAS  Google Scholar 

  151. Yazdanbakhsh N, Fisahn J (2010) Analysis of Arabidopsis thaliana root growth kinetics with high temporal and spatial resolution. Ann Bot 105:783–791

    Article  PubMed  Google Scholar 

  152. Chaerle L, Lenk S, Leinonen I, Jones HG, Van Der Straeten D, Buschmann C (2009) Multi-sensor plant imaging: towards the development of a stress-catalogue. Biotechnol J 4:1152–1167

    Article  PubMed  CAS  Google Scholar 

  153. Bylesjö M, Segura V, Soolanayakanahally RY, Rae AM, Trygg J, Gustafsson P, Jansson S, Street NR (2008) LAMINA: a tool for rapid quantification of leaf size and shape parameters. BMC Plant Biol 22(8):82

    Article  Google Scholar 

  154. Nagel KA, Kastenholz B, Jahnke S, van Dusschoten D, Aach T, Mühlich M, Truhn D, Scharr H, Terjung S, Walter A, Schurr U (2009) Temperature responses of roots: impact on growth, root system architecture and implications for phenotyping. Funct Plant Biol 36:947–959

    Article  CAS  Google Scholar 

  155. Kasper TC, Ewing RP (1997) ROOTEDGE: software for measuring root length from desktop scanner images. Agron J 89:932–940

    Article  Google Scholar 

  156. Berzin I, Cohen B, Mills D, Dinstein I, Merchuk JC (2000) RHIZOSCAN: a semiautomatic image processing system for characterization of the morphology and secondary metabolite concentration in hairy root cultures. Biotechnol Bioeng 70:17–24

    Article  PubMed  CAS  Google Scholar 

  157. French A, Ubeda-Tomás S, Holman TJ, Bennett MJ, Pridmore T (2009) High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiol 150:1784–1795

    Article  PubMed  CAS  Google Scholar 

  158. Armengaud P (2009) EZ-Rhizo software: the gateway to root architecture analysis. Plant Signal Behav 4:139–141

    Article  PubMed  Google Scholar 

  159. Wang L, Uilecan IV, Assadi AH, Kozmik CA, Spalding EP (2009) HYPOTrace: image analysis software for measuring hypocotyl growth and shape demonstrated on Arabidopsis seedlings undergoing photomorphogenesis. Plant Physiol 149:1632–1637

    Article  PubMed  CAS  Google Scholar 

  160. Van As H (2007) Intact plant MRI for the study of cell water relations, membrane permeability, cell-to-cell and long distance water transport. J Exp Bot 58:743–756

    PubMed  Google Scholar 

  161. Jia X, Mendu V, Tang G (2010) An array platform for identification of stress-responsive MicroRNAs in plants. Methods Mol Biol 639:253–269

    Article  PubMed  CAS  Google Scholar 

  162. Tardieu F, Tuberosa R (2010) Dissection and modelling of abiotic stress tolerance in plants. Curr Opin Plant Biol 13:206–212

    Article  PubMed  Google Scholar 

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Vandenbroucke, K., Metzlaff, M. (2013). Abiotic Stress Tolerant Crops: Genes, Pathways and Bottlenecks. In: Christou, P., Savin, R., Costa-Pierce, B.A., Misztal, I., Whitelaw, C.B.A. (eds) Sustainable Food Production. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-5797-8_415

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