Mathematics of Complexity and Dynamical Systems

2011 Edition
| Editors: Robert A. Meyers (Editor-in-Chief)

Fractals and Wavelets: What Can We Learn on Transcription and Replication from Wavelet-Based Multifractal Analysis of DNA Sequences?

  • Alain Arneodo
  • Benjamin Audit
  • Edward-Benedict Brodie of Brodie
  • Samuel Nicolay
  • Marie Touchon
  • Yves d'Aubenton-Carafa
  • Maxime Huvet
  • Claude Thermes
Reference work entry
DOI: https://doi.org/10.1007/978-1-4614-1806-1_39

Article Outline

Glossary

Definition of the Subject

Introduction

A Wavelet-Based Multifractal Formalism: The Wavelet Transform Modulus Maxima Method

Bifractality of Human DNA Strand-Asymmetry Profiles Results from Transcription

From the Detection of Relication Origins Using the Wavelet Transform Microscope to the Modeling of Replication in Mammalian Genomes

A Wavelet-Based Methodology to Disentangle Transcription- and Replication-Associated Strand Asymmetries Reveals a Remarkable Gene Organization in the Human Genome

Future Directions

Acknowledgments

Bibliography

Keywords

Replication Origin Multifractal Analysis Singularity Spectrum Maximum Line Multifractal Formalism 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.
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Notes

Acknowledgments

We thank O. Hyrien, F. Mongelard and C. Moskalenko for interesting discussions. This work was supported by the Action Concertée Incitative Informatique, Mathématiques, Physique en Biologie Moléculaire 2004 under the project “ReplicOr”, the Agence Nationale de la Recherche under the project “HUGOREP” and the program “Emergence” of the Conseil Régional Rhônes-Alpes and by the Programme d'Actions Intégrées Tournesol.

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Copyright information

© Springer-Verlag 2012

Authors and Affiliations

  • Alain Arneodo
    • 1
  • Benjamin Audit
    • 1
  • Edward-Benedict Brodie of Brodie
    • 1
  • Samuel Nicolay
    • 2
  • Marie Touchon
    • 3
    • 5
  • Yves d'Aubenton-Carafa
    • 4
  • Maxime Huvet
    • 4
  • Claude Thermes
    • 4
  1. 1.Laboratoire Joliot–Curie and Laboratoire de PhysiqueENS-Lyon CNRSLyon CedexFrance
  2. 2.Institut de MathématiqueUniversité de LiègeLiègeBelgium
  3. 3.Génétique des Génomes Bactériens, Institut PasteurCNRSParisFrance
  4. 4.Centre de Génétique MoléculaireCNRSGif-sur-YvetteFrance
  5. 5.Atelier de BioinformatiqueUniversité Pierre et Marie CurieParisFrance