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B Cell Epitope Prediction

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Synonyms

Antigen–antibody binding site prediction; Antigen–antibody interface residue prediction; Computational methods for mapping B cell epitopes

Definition

B cell epitopes, also known as antigenic determinants, are restricted parts of molecules that are recognized by immunoglobulin molecules (antibodies) either in their free form or as membrane-bound B cell receptors. B cell epitopes typically belong to one of two classes: linear (continuous or sequential) epitopes or conformational (discontinuous) epitopes. Linear epitopes are short peptides that correspond to a contiguous amino acid sequence fragment of a protein. Linear epitopes are usually identified using assays such as PEPSCAN. Consequently, current experimental methods offer little direct evidence indicating that each residue in the epitope does in fact make contact with one or more residues in the paratope (the part in the antibody that binds to the antigen). The second class of B cell epitopes is called conformational...

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References

  • Baldi P, Brunak S (2001) Bioinformatics: the machine learning approach, 2nd edn. MIT Press, Cambridge, MA

    Google Scholar 

  • Blythe M, Flower D (2005) Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci 14:246–248

    PubMed  CAS  Google Scholar 

  • Bublil E, Freund N, Mayrose I, Penn O, Roitburd-Berman A, Rubinstein N, Pupko T, Gershoni J (2007) Stepwise prediction of conformational discontinuous B cell epitopes using the Mapitope algorithm. Proteins Struct Funct Bioinform 68:294–304, Wiley

    CAS  Google Scholar 

  • EL-Manzalawy Y, Honavar V (2010) Recent advances in B cell epitope prediction methods. Immunome Res 6:S2

    PubMed  Google Scholar 

  • Fleury D, Daniels R, Skehel J, Knossow M, Bizebard T (2000) Structural evidence for recognition of a single epitope by two distinct antibodies. Proteins 40:572

    PubMed  CAS  Google Scholar 

  • Greenbaum J, Andersen P, Blythe M, Bui H, Cachau R, Crowe J, Davies M, Kolaskar A, Lund O, Morrison S, Mumey B, Ofran Y, Pellequer J, Pinilla C, Ponomarenko J, Raghava G, van Regenmortel M, Roggen E, Sette A, Schlessinger A, Sollner J, Zand M, Peters B (2007) Towards a consensus on datasets and evaluation metrics for developing B cell epitope prediction tools. J Mol Recognit 20:75–82

    PubMed  CAS  Google Scholar 

  • Parker J, Guo D (1986) New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and x-ray-derived accessible sites. Biochemistry 25:5425–5432, American Chemical Society

    PubMed  CAS  Google Scholar 

  • Pellequer J, Westhof E, Van Regenmortel M (1993) Correlation between the location of antigenic sites and the prediction of turns in proteins. Immunol Lett 36:83–99

    PubMed  CAS  Google Scholar 

  • Ponomarenko J, Bourne P (2007) Antibody-protein interactions: benchmark datasets and prediction tools evaluation. BMC Struct Biol 7:64, BioMed Central Ltd

    PubMed  Google Scholar 

  • Walter G (1986) Production and use of antibodies against synthetic peptides. J Immunol Methods 88:149–161

    PubMed  CAS  Google Scholar 

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Correspondence to Yasser EL-Manzalawy .

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EL-Manzalawy, Y., Honavar, V. (2013). B Cell Epitope Prediction. In: Dubitzky, W., Wolkenhauer, O., Cho, KH., Yokota, H. (eds) Encyclopedia of Systems Biology. Springer, New York, NY. https://doi.org/10.1007/978-1-4419-9863-7_88

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