Encyclopedia of Systems Biology

2013 Edition
| Editors: Werner Dubitzky, Olaf Wolkenhauer, Kwang-Hyun Cho, Hiroki Yokota

Toponomics

  • Walter Schubert
Reference work entry
DOI: https://doi.org/10.1007/978-1-4419-9863-7_631

Definition

Toponomics is a discipline in systems biology, molecular cell biology, and histology concerning the study of the toponome of organisms. The toponome is the spatial network code of proteins and other biomolecules in morphologically intact cells and tissues. The term “toponome” is derived from the ancient Greek nouns “topos” (τóπoς; place, position) and “nomos” (νóμoς; law), addressing the fact that the network of biomolecules in cells follows topological rules enabling coordinated actions (Schubert 2003). This spatial organization can be described by a three symbol code (Schubert 2003, 2007a; Schubert et al. 2006). The core technology decoding the toponome is the dimension-unlimited functional super-resolution microscopy TIS.

Introduction

Cellular functionalities comprise at least four organizational levels: genome, transcriptome, proteome, and toponome. The toponome (Schubert 2003) is defined as the spatial network code of proteins and other biomolecules in morphologically...

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Notes

Acknowledgments

Supported by the Klaus Tschira Foundation (KTS), the Deutsche Forschungsgemeinschaft (DFG Schu627/10-1), the BMBF (grants CELLECT, NBL3, NGFN2, and NGFNplus), the DFG-Innovationskolleg (INK15) and the EU project IMAGINT (Health-F5-2011-259881), as well as the human toponome project (www.huto.toposnomos.com). We thank ToposNomos Ltd. for providing access to the TISTM reference lab.

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© Springer Science+Business Media, LLC 2013

Authors and Affiliations

  1. 1.Molecular Pattern Recognition Research (MPRR) GroupOtto-von-Guericke University MagdeburgMagdeburgGermany
  2. 2.Chinese Academy of Science and Max Planck Society (CAS-MPG) Partner Institute for Computational Biology (PICB)ShanghaiChina
  3. 3.Human Toponome Project, ToposNomos LtdMunichGermany