Skip to main content

Automated Term Recognition

  • Reference work entry
Encyclopedia of Systems Biology
  • 72 Accesses

Synonyms

Term extraction; Terminology management

Definition

Automatic term recognition (ATR) refers to the automatic extraction of technical terms from domain-specific texts. It additionally encompasses the assignment of semantic categories of the extracted terms and mapping of them to concepts contained within terminological or ontological resources.

Characteristics

The Need for Term Recognition

With an overwhelming number of textual resources becoming available in biomedicine, there is an increased interest in text mining techniques that can identify, extract, manage, and exploit biomedical knowledge hidden in the literature (Ananiadou and McNaught 2006). In systems biology, terms are the backbone of such knowledge, since they constitute the linguistic realization of specialized concepts in the biology domain. As the main purpose of terms is to classify scientific knowledge, they are used as a means of scientific communication to convey biological concepts. Once extracted, they can...

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 899.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 549.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Ananiadou S, McNaught J (eds) (2006) Text mining for biology and biomedicine. Artech House, Boston/London

    Google Scholar 

  • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. Nat Genet 25(1):25–29

    Article  PubMed  CAS  Google Scholar 

  • Bodenreider O (2004) The unified medical language system (UMLS): integrating biomedical terminology. Nucleic Acids Res 32(Database issue):D267–D270

    Article  PubMed  CAS  Google Scholar 

  • de Matos P, Alcantara R, Dekker A, Ennis M, Hastings J, Haug K, Spiteri I, Turner S, Steinbeck C (2010) Chemical entities of biological interest: an update. Nucleic Acids Res 38(Database issue):D249–D254

    Article  PubMed  CAS  Google Scholar 

  • Frantzi K, Ananiadou S, Mima H (2000) Automatic recognition of multi-word terms: the C-value/NC-value method. Int J Digit Libr 3(2):115–130

    Article  Google Scholar 

  • Kageura K, Umino B (1996) Methods of automatic term recognition – a review. Terminology 3(2):259–289

    Article  Google Scholar 

  • Liu H, Hu ZZ, Zhang J, Wu C (2006) BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics 22(1):103–105

    Article  PubMed  CAS  Google Scholar 

  • Okazaki N, Ananiadou S, Tsujii J (2010) Building a high quality sense inventory for improved abbreviation disambiguation. Bioinformatics 26(9):1246–1253

    Article  PubMed  CAS  Google Scholar 

  • Thompson P, McNaught J, Montemagni S, Calzolari N, Del Gratta R, Lee V, Marchi S, Monachini M, Pezik P, Quochi V, Rupp C, Sasaki Y, Venturi G, Rebholz-Schuhmann D, Ananiadou S (2011) The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinformatics 12:397

    Article  PubMed  Google Scholar 

  • Wren JD, Garner HR (2002) Heuristics for identification of acronym-definition patterns within text: towards an automated construction of comprehensive acronym definition dictionaries. Methods Inf Med 41(5):426–434

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sophia Ananiadou .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media, LLC

About this entry

Cite this entry

Ananiadou, S. (2013). Automated Term Recognition. In: Dubitzky, W., Wolkenhauer, O., Cho, KH., Yokota, H. (eds) Encyclopedia of Systems Biology. Springer, New York, NY. https://doi.org/10.1007/978-1-4419-9863-7_135

Download citation

Publish with us

Policies and ethics