Encyclopedia of Systems Biology

2013 Edition
| Editors: Werner Dubitzky, Olaf Wolkenhauer, Kwang-Hyun Cho, Hiroki Yokota

Proteomics Workflow

  • Lars Malmström
  • Andreas Quandt
  • Ela Pustulka-Hunt
Reference work entry
DOI: https://doi.org/10.1007/978-1-4419-9863-7_1006

Synonyms

Definition

A workflow (Yu and Buyya 2005) is an ordered sequence of steps applied to a set of inputs (parameters and data) and producing some outputs. The steps can be part of a single application or may use several separate applications.

Workflows are often represented by graphs where nodes represent the steps, and edges the connectors between them, see Fig.  1. Most workflow management systems only allow the definition of a workflow as a directed acyclic graph. However, some can also handle loops or conditional execution to support iteration or event-driven decision points.
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References

  1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215(3):403–10PubMedGoogle Scholar
  2. Yu J, Buyya R (2005) A taxonomy of scientific workflow systems for grid computing. SIGMOD Rec 34(3):44–49Google Scholar

Copyright information

© Springer Science+Business Media, LLC 2013

Authors and Affiliations

  • Lars Malmström
    • 1
  • Andreas Quandt
    • 1
  • Ela Pustulka-Hunt
    • 2
  1. 1.Institute of Molecular Systems Biology IMSBETH ZurichZurichSwitzerland
  2. 2.GS SystemsXETH ZurichZurichSwitzerland