The Archaea: A Personal Overview of the Formative Years

Reference work entry

Abstract

This personal essay providing an overview on the Archaea and third form of life, methanogens, was published in The Prokaryotes, Third Edition.

Keywords

Diphtheria Toxin Typical Bacterium Extreme Halophile European Molecular Biology Organization Radioactive Nucleotide 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Notes

Acknowledgments

I thank Otto Kandler and Gary Olsen for kindly providing factual information.

References

  1. Balch WE, Wolfe RS (1976) New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressurized atmosphere. Appl Environ Microbiol 32:781–791PubMedCentralPubMedGoogle Scholar
  2. Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296PubMedCentralPubMedGoogle Scholar
  3. Barker HA (1936) Studies upon the methane-producing bacteria. Arch Mikrobiol 7:420–438CrossRefGoogle Scholar
  4. Barker HA (1940) Studies upon the methane fermentation. IV: the isolation and culture of Methanobacillus omelianskii. Antonie van Leeuwenhoek 6:201–220CrossRefGoogle Scholar
  5. Brock TD (1978) Thermophilic organisms and life at high temperatures. Springer, BerlinCrossRefGoogle Scholar
  6. Brock TD, Brock KM, Belly TR, Weiss RL (1972) Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch Mikrobiol 84:54–68PubMedCrossRefGoogle Scholar
  7. Brosius J, Palmer ML, Kennedy PJ, Noller HF (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75:4801–4805PubMedCentralPubMedCrossRefGoogle Scholar
  8. Bryant MP, Wolin EA, Wolin MJ, Wolfe RS (1967) Methanobacillus omelianskii, a symbiotic association of two species of bacteria. Arch Mikrobiol 59:20–31PubMedCrossRefGoogle Scholar
  9. Bryant MP, McBride BC, Wolfe RS (1968) Hydrogen-oxidizing methane bacteria. I. Cultivation and methanogenesis. J Bacteriol 95:1118–1123PubMedCentralPubMedGoogle Scholar
  10. De Rosa M, Gambacorta A, Bu’Lock JD (1975) Extremely thermophilic acidophilic bacteria convergent with Sulfolobus acidocaldarius. J Gen Microbiol 86:156–164PubMedCrossRefGoogle Scholar
  11. De Rosa M, Gambacorta A, Bu’Lock JD (1976) The caldariella group of extreme thermoacidophilic bacteria: direct comparison of lipids in Sulfolobus, Thermoplasma, and the MT strains. Phytochemistry 15:143–145CrossRefGoogle Scholar
  12. Eirich LD, Vogels GD, Wolfe RS (1978) Proposed structure for coenzyme F420 from Methanobacterium. Biochemistry 17:4583–4593PubMedCrossRefGoogle Scholar
  13. Fox GE, Magrum LJ, Balch WE, Wolfe RS, Woese CR (1977) Classification of methanogenic bacteria by 16S ribosomal RNA characterization. Proc Natl Acad Sci USA 74:4537–4541PubMedCentralPubMedCrossRefGoogle Scholar
  14. Gupta R, Lanter JM, Woese CR (1983) Sequence of the 16S ribosomal RNA from Halobacterium volcanii, an archaebacterium. Science 221:656–659PubMedCrossRefGoogle Scholar
  15. Kandler O (ed) (1982) Proceedings of the first international workshop on Archaebacteria. Zbl Bakt Hyg, 1. Abt Orig C3(2):171–345Google Scholar
  16. Kandler O, Hippe H (1977) Lack of peptidoglycan in the cell walls of Methanosarcina barkeri. Arch Microbiol 113:57–60PubMedCrossRefGoogle Scholar
  17. Kandler O, König H (1978) Chemical composition of the peptidoglycan-free cell walls of methanogenic bacteria. Arch Microbiol 118:141–152PubMedCrossRefGoogle Scholar
  18. Kandler O, Zillig W (eds) (1986) Archaebacteria ᾿85. Gustav Fischer Verlag, StuttgartGoogle Scholar
  19. Kates M, Yengoyan LS, Sastry PS (1965) A diether analog of phosphatidyl glycerophosphate in Halobacterium cutirubrum. Biochim Biophys Acta 98:252–268PubMedCrossRefGoogle Scholar
  20. Kessel M, Klink F (1980) Archaebacterial elongation factor is ADP-ribosylated by diphtheria toxin. Nature (London) 287:250–251CrossRefGoogle Scholar
  21. Kessel M, Klink F (1982) Identification and comparison of eighteen Archaebacteria by means of the diphtheria toxin reaction. Zbl Bakt Mikrobiol Hyg Abt I, Orig C3:140–148Google Scholar
  22. Klink F (1985) Elongation factors. In: Woese CR, Wolfe RS (eds) The bacteria, vol VIII. Academic, New York, pp 379–410Google Scholar
  23. Langworthy TA, Smith PF, Mayberry WR (1972) Lipids of Thermoplasma acidophilum. J Bacteriol 112:1193–1200PubMedCentralPubMedGoogle Scholar
  24. Madigan MT, Martinko JM, Parker J (1977) Brock, biology of microorganisms. Prentice-Hall, Upper Saddle RiverGoogle Scholar
  25. McBride BC, Wolfe RS (1971) A new coenzyme of methyl transfer, coenzyme M. Biochemistry 10:2317–2324PubMedCrossRefGoogle Scholar
  26. Pechman KJ, Woese CR (1972) Characterization of the primary structural homology between the 16S ribosomal RNAs of Escherichia coli and Bacillus megaterium by oligomer cataloging. J Mol Evol 1:230–240PubMedCrossRefGoogle Scholar
  27. Raven PH, Johnson GB (2002) Biology. McGraw-Hill, New YorkGoogle Scholar
  28. Sanger F, Thompson EOP (1953) The amino-acid sequence in the glycyl chain of insulin. Biochem J 53:353–374PubMedCentralPubMedGoogle Scholar
  29. Sanger F, Tuppy H (1951) The amino-acid sequence in the phenylalanyl chain of insulin. Biochem J 49:481–490PubMedCentralPubMedGoogle Scholar
  30. Sanger F, Brownlee GG, Barrell BG (1965) A two-dimensional fractionation procedure for radioactive nucleotides. J Mol Biol 13:373–398PubMedCrossRefGoogle Scholar
  31. Schleifer KH, Kandler O (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477PubMedCentralPubMedGoogle Scholar
  32. Sogin SJ, Sogin ML, Woese CR (1972) Phylogenetic measurement in prokaryotes by primary structural characterization. J Mol Evol 1:173–184PubMedCrossRefGoogle Scholar
  33. Steber J, Schleifer KH (1975) Halococcus morrhuae: a sulfated heteropolysaccharide as the structural component of the bacterial cell wall. Arch Microbiol 105:173–177PubMedCrossRefGoogle Scholar
  34. Stetter KO, Winter J, Hartlieb R (1980) DNA dependent RNA polymerase of the archaebacterium Methanobacterium thermoautotrophicum. Zbl Bakt Hyg, I Abt Orig C1:201–218Google Scholar
  35. Sturm S, Schönefeld V, Zillig W, Janekovic D, Stetter KO (1980) Structure and function of the DNA dependent RNA polymerase of the archaebacterium Thermoplasma acidophilum. Zbl Bakt Hyg, I Abt Orig C1:12–25Google Scholar
  36. Taylor CD, Wolfe RS (1974) Structure and methylation of coenzyme M. J Biol Chem 249:4879–4885PubMedGoogle Scholar
  37. Taylor CD, McBride BC, Wolfe RS, Bryant MP (1974) Coenzyme M, essential for growth of a rumen strain of Methanobacterium ruminantium. J Bacteriol 120:974–975PubMedCentralPubMedGoogle Scholar
  38. Tornabene TG, Kates M, Gelpi E, Oró J (1969) Occurrence of squalene, di and tetrahydrosqualenes and vitamin MK8 in an extremely halophilic bacterium, Halobacterium cutirubrum. J Lipid Res 10:294–303PubMedGoogle Scholar
  39. Tornabene TG, Wolfe RS, Balch WE, Holzer G, Fox GE, Oró J (1978) Phytanyl-glycerol ethers and squalene in the archaebacterium Methanobacterium thermoautotrophicum. J Mol Evol 11:259–266PubMedCrossRefGoogle Scholar
  40. Tzeng SF, Wolfe RS, Bryant MP (1975) Factor-420-dependent pyridine nucleotide-linked hydrogenase system of Methanobacterium ruminantium. J Bacteriol 121:184–191PubMedCentralPubMedGoogle Scholar
  41. Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domains: the primary kingdoms. Proc Natl Acad Sci USA 74:5088–5090PubMedCentralPubMedCrossRefGoogle Scholar
  42. Woese CR, Sogin M, Stahl D, Lewis BJ, Bonen L (1976) A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic bacilli: some modifications in the Sanger method for RNA sequencing. J Mol Evol 7:197–213PubMedCrossRefGoogle Scholar
  43. Woese CR, Magrum LJ, Fox GE (1978) Archaebacteria. J Mol Evol 11:245–252PubMedCrossRefGoogle Scholar
  44. Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms. Proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87:4576–4579PubMedCentralPubMedCrossRefGoogle Scholar
  45. Wolin EA, Wolin MJ, Wolfe RS (1963) Formation of methane by bacterial extracts. J Biol Chem 238:2882–2886PubMedGoogle Scholar
  46. Zillig W, Stetter KO, Tobien M (1978) DNA dependent RNA polymerase from Halobacterium halobium. Eur J Biochem 91:193–199PubMedCrossRefGoogle Scholar
  47. Zillig W, Stetter KO, Janekovic D (1979) DNA dependent RNA polymerase from the archaebacterium Sulfolobus acidocaldarius. Eur J Biochem 96:597–604PubMedCrossRefGoogle Scholar
  48. Zillig W, Stetter KD, Schnabel R, Thomm M (1985) DNA-dependent RNA polymerases of the Archaebacteria. In: Woese CR, Wolfe RS (eds) The bacteria, vol VIII. Academic, New York, pp 499–524Google Scholar
  49. Zukerkandl E, Pauling L (1965) Molecules as documents of evolutionary history. J Theor Biol 8:357–366CrossRefGoogle Scholar

Copyright information

© Springer-Verlag Berlin Heidelberg 2014

Authors and Affiliations

  1. 1.Department of MicrobiologyUniversity of Illinois at Urbana-ChampaignUrbanaUSA

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