Bacterial Cell Envelopes: Composition, Architecture, and Origin

Reference work entry

Abstract

The bacterial envelope is a complex layered structure, whose primary function is to protect the cell from the environment. The Gram-staining procedure has been a fundamental method to classify the bacteria for more than 100 years. It was based on the effect of the structure and composition of the bacterial envelope on the staining procedure. It has made it possible to classify the bacteria in two main categories: the Gram-positive, which bind the Gram stain, and Gram-negative bacteria, which do not. Currently, the prokaryotes are classified in 30 phyla of Bacteria and in 5 phyla of Archaea. This classification does not consider the Gram-staining properties which was an excessive simplification. The growing amount of data concerning the genomic sequences of bacteria has significantly amended the view of the bacterial phylogeny. In addition, the access to the genetics of the biogenesis of the cell envelope has also allowed envisioning the bacterial Tree of Life in a different way. The bacterial envelopes are now defined with the number of membranes they contain: the cells are either diderms or monoderms. In addition, the presence or the absence of lipopolysaccharides (LPS) in the diderm envelopes is also a fundamental criterion. This chapter is an overview of current knowledge about the composition and architecture of bacterial envelopes in light of recent data showing that the diversity of structures allows reaching the same main objective, the survival and the protection of the bacterium from its environment.

Keywords

Bacterial envelopes Diderm Monoderm Cell wall 

References

  1. Albers SV, Meyer BH (2011) The archaeal cell envelope. Nat Rev Microbiol 9:414–426CrossRefGoogle Scholar
  2. Beveridge T (2001) Use of the gram stain in microbiology. Biotech Histochem 76:111–118CrossRefGoogle Scholar
  3. Braun V (1975) Covalent lipoprotein from the outer membrane of Escherichia coli. Biochim Biophys Acta 415:335–377CrossRefGoogle Scholar
  4. Brosig A, Nesper J, Boos W, Welte W, Diederichs K (2009) Crystal structure of a major outer membrane protein from Thermus thermophilus HB27. J Mol Biol 385:1445–1455CrossRefGoogle Scholar
  5. Brown S, Santa Maria JP Jr, Walker S (2013) Wall teichoic acids of gram-positive bacteria. Annu Rev Microbiol 67:313–336CrossRefGoogle Scholar
  6. Carel C, Nukdee K, Cantaloube S, Bonne M, Diagne CT, Laval F, Daffe M, Zerbib D (2014) Mycobacterium tuberculosis proteins involved in mycolic acid synthesis and transport localize dynamically to the old growing pole and septum. PLoS One 9, e97148CrossRefGoogle Scholar
  7. Cavalier-Smith T (2006) Rooting the tree of life by transition analyses. Biol Direct 1:19CrossRefGoogle Scholar
  8. Cavalier-Smith T (2010) Deep phylogeny, ancestral groups and the four ages of life. Philos Trans R Soc Lond B Biol Sci 365:111–132CrossRefGoogle Scholar
  9. Chambers HF (2003) Solving staphylococcal resistance to beta-lactams. Trends Microbiol 11:145–148CrossRefGoogle Scholar
  10. Chopra I, Storey C, Falla TJ, Pearce JH (1998) Antibiotics, peptidoglycan synthesis and genomics: the chlamydial anomaly revisited. Microbiology 144(Pt 10):2673–2678CrossRefGoogle Scholar
  11. Daffé M, Crick DC, Jackson M (2014) Genetics of capsular polysaccharides and cell envelope (glyco)lipids. Microbiol Spectr 2Google Scholar
  12. Dramsi S, Magnet S, Davison S, Arthur M (2008) Covalent attachment of proteins to peptidoglycan. FEMS Microbiol Rev 32:307–320CrossRefGoogle Scholar
  13. Dufresne K, Paradis-Bleau C (2015) Biology and assembly of the bacterial envelope. Adv Exp Med Biol 883:41–76CrossRefGoogle Scholar
  14. Forterre P (2015) The universal tree of life: an update. Front Microbiol 6:717CrossRefGoogle Scholar
  15. Fu LM, Fu-Liu CS (2002) Is Mycobacterium tuberculosis a closer relative to Gram-positive or Gram–negative bacterial pathogens? Tuberculosis 82:85–90CrossRefGoogle Scholar
  16. Gupta RS (1998) What are archaebacteria: life’s third domain or monoderm prokaryotes related to Gram-positive bacteria? A new proposal for the classification of prokaryotic organisms. Mol Microbiol 29:695–707CrossRefGoogle Scholar
  17. Gupta RS (2011) Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes. Antonie Van Leeuwenhoek 100:171–182CrossRefGoogle Scholar
  18. Holtje JV (1998) Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli. Microbiol Mol Biol Rev 62:181–203Google Scholar
  19. Jankute M, Cox JA, Harrison J, Besra GS (2015) Assembly of the mycobacterial cell wall. Annu Rev Microbiol 69:405–423CrossRefGoogle Scholar
  20. Jordan S, Hutchings MI, Mascher T (2008) Cell envelope stress response in Gram-positive bacteria. FEMS Microbiol Rev 32:107–146CrossRefGoogle Scholar
  21. Klebba PE (2005) The porinologist. J Bacteriol 187:8232–8236CrossRefGoogle Scholar
  22. Lake JA (2009) Evidence for an early prokaryotic endosymbiosis. Nature 460:967–971CrossRefGoogle Scholar
  23. Lugtenberg EJ, Peters R (1976) Distribution of lipids in cytoplasmic and outer membranes of Escherichia coli K12. Biochim Biophys Acta 441:38–47CrossRefGoogle Scholar
  24. Lyu ZX, Zhao XS (2015) Periplasmic quality control in biogenesis of outer membrane proteins. Biochem Soc Trans 43:133–138CrossRefGoogle Scholar
  25. Marrakchi H, Laneelle MA, Daffe M (2014) Mycolic acids: structures, biosynthesis, and beyond. Chem Biol 21:67–85CrossRefGoogle Scholar
  26. Meroueh SO, Bencze KZ, Hesek D, Lee M, Fisher JF, Stemmler TL, Mobashery S (2006) Three-dimensional structure of the bacterial cell wall peptidoglycan. Proc Natl Acad Sci U S A 103:4404–4409CrossRefGoogle Scholar
  27. Mogensen JE, Otzen DE (2005) Interactions between folding factors and bacterial outer membrane proteins. Mol Microbiol 57:326–346CrossRefGoogle Scholar
  28. Mullineaux CW, Nenninger A, Ray N, Robinson C (2006) Diffusion of green fluorescent protein in three cell environments in Escherichia coli. J Bacteriol 188:3442–3448CrossRefGoogle Scholar
  29. Nakayama H, Kurokawa K, Lee BL (2012) Lipoproteins in bacteria: structures and biosynthetic pathways. FEBS J 279:4247–4268CrossRefGoogle Scholar
  30. Nataraj V, Varela C, Javid A, Singh A, Besra GS, Bhatt A (2015) Mycolic acids: deciphering and targeting the Achilles’ heel of the tubercle bacillus. Mol Microbiol 98:7–16CrossRefGoogle Scholar
  31. Nikaido H (2003) Molecular basis of bacterial outer membrane permeability revisited. Microbiol Mol Biol Rev 67:593–656CrossRefGoogle Scholar
  32. Pace NR (2009) Mapping the tree of life: progress and prospects. Microbiol Mol Biol Rev 73:565–576CrossRefGoogle Scholar
  33. Pace NR, Sapp J, Goldenfeld N (2012) Phylogeny and beyond: scientific, historical, and conceptual significance of the first tree of life. Proc Natl Acad Sci U S A 109:1011–1018CrossRefGoogle Scholar
  34. Pavkov-Keller T, Howorka S, Keller W (2011) The structure of bacterial S-layer proteins. Prog Mol Biol Transl Sci 103:73–130CrossRefGoogle Scholar
  35. Pillet F, Formosa-Dague C, Baaziz H, Dague E, Rols MP (2016) Cell wall as a target for bacteria inactivation by pulsed electric fields. Sci Rep 6:19778CrossRefGoogle Scholar
  36. Pink D, Moeller J, Quinn B, Jericho M, Beveridge T (2000) On the architecture of the gram-negative bacterial murein sacculus. J Bacteriol 182:5925–5930CrossRefGoogle Scholar
  37. Raetz CR, Whitfield C (2002) Lipopolysaccharide endotoxins. Annu Rev Biochem 71:635–700CrossRefGoogle Scholar
  38. Rothfuss H, Lara JC, Schmid AK, Lidstrom ME (2006) Involvement of the S-layer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1. Microbiology 152:2779–2787CrossRefGoogle Scholar
  39. Silhavy TJ, Kahne D, Walker S (2010) The bacterial cell envelope. Cold Spring Harb Perspect Biol 2:a000414CrossRefGoogle Scholar
  40. Sutcliffe IC (2010) A phylum level perspective on bacterial cell envelope architecture. Trends Microbiol 18:464–470CrossRefGoogle Scholar
  41. Swoboda JG, Campbell J, Meredith TC, Walker S (2010) Wall teichoic acid function, biosynthesis, and inhibition. Chembiochem 11:35–45CrossRefGoogle Scholar
  42. Tamura A, Ohashi N, Urakami H, Miyamura S (1995) Classification of Rickettsia tsutsugamushi in a new genus, Orientia gen. nov., as Orientia tsutsugamushi comb. nov. Int J Syst Bacteriol 45:589–591CrossRefGoogle Scholar
  43. Taylor BL (1983) Role of proton motive force in sensory transduction in bacteria. Annu Rev Microbiol 37:551–573CrossRefGoogle Scholar
  44. Turner RD, Vollmer W, Foster SJ (2014) Different walls for rods and balls: the diversity of peptidoglycan. Mol Microbiol 91:862–874CrossRefGoogle Scholar
  45. van der Does C, Swaving J, van Klompenburg W, Driessen AJ (2000) Non-bilayer lipids stimulate the activity of the reconstituted bacterial protein translocase. J Biol Chem 275:2472–2478CrossRefGoogle Scholar
  46. Vandeputte-Rutten L, Kramer RA, Kroon J, Dekker N, Egmond MR, Gros P (2001) Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site. EMBO J 20:5033–5039CrossRefGoogle Scholar
  47. Veyron-Churlet R, Guerrini O, Mourey L, Daffe M, Zerbib D (2004) Protein-protein interactions within the Fatty Acid Synthase-II system of Mycobacterium tuberculosis are essential for mycobacterial viability. Mol Microbiol 54:1161–1172CrossRefGoogle Scholar
  48. Vollmer W (2008) Structural variation in the glycan strands of bacterial peptidoglycan. FEMS Microbiol Rev 32:287–306CrossRefGoogle Scholar
  49. Vollmer W, Seligman SJ (2010) Architecture of peptidoglycan: more data and more models. Trends Microbiol 18:59–66CrossRefGoogle Scholar
  50. Weidel W, Pelzer H (1964) Bagshaped macromolecules – a new outlook on bacterial cell walls. Adv Enzymol Relat Areas Mol Biol 26:193–232Google Scholar
  51. Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A 87:4576–4579CrossRefGoogle Scholar
  52. Zuber B, Chami M, Houssin C, Dubochet J, Griffiths G, Daffe M (2008) Direct visualization of the outer membrane of mycobacteria and corynebacteria in their native state. J Bacteriol 190:5672–5680CrossRefGoogle Scholar

Copyright information

© Springer International Publishing AG 2017

Authors and Affiliations

  1. 1.LISBPUniversité de Toulouse, CNRS, INRA, INSAToulouseFrance
  2. 2.IPBSUniversité de Toulouse, CNRS, UPSToulouseFrance

Personalised recommendations