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Metagenome of Acidic Hot Spring Microbial Planktonic Community: Structural and Functional Insights

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Synonyms

The microbiome of Andean acidic hot springs

Definition

Metagenomic analyses were done to obtain a deeper view of the microbial community structure and to gain insight regarding the functional properties present in the planktonic fraction of these Neotropical high Andean acidic hot springs.

Introduction

High-mountain Andean ecosystems are rich in biodiversity and natural resources (Myers et al. 2000). The South American Andean region is part of what is known as the “Ring of Fire” and has several hot springs that represent unique and undisturbed extreme environments due to their high elevation and exposure to ultraviolet (UV) light. These springs are heated mainly by the underlying magma chamber from volcanic activity; they are oligotrophic and vary in their geochemistry, such as mineral content, temperature, and pH. Thus far, little is known regarding the microbiomes of these high-mountain ecosystems. A hot spring is characterized by discharge of hot water from a vent. There...

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Metagenome of Acidic Hot Spring Microbial Planktonic Community: Structural and Functional Insights, Fig. 1
Metagenome of Acidic Hot Spring Microbial Planktonic Community: Structural and Functional Insights, Fig. 2

References

  • Aguilera A, Souza-Egipsy V, González-Toril E, Rendueles O, Amils R. Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermal hot springs. Int Microbiol. 2010;13(1):21–32.

    CAS  PubMed  Google Scholar 

  • Bohórquez LC, Delgado-Serrano L, Lopez G, Osorio-Forero C, Klepac-Ceraj V, et al. In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes. Microb Ecol. 2012a;63:103–15.

    PubMed  Google Scholar 

  • Bohórquez LC, Ruiz-Pérez CA, Zambrano MM. Proteorhodopsin-like genes present in thermoacidophilic high-mountain microbial communities. Appl Environ Microbiol. 2012b;78(21):7813–7.

    PubMed Central  PubMed  Google Scholar 

  • Bouraoui H, Rebib H, Aissa MB, Touzel JP, O’donohue M, Manai M. Paenibacillus marinum sp. nov., a thermophilic xylanolytic bacterium isolated from a marine hot spring in Tunisia. J Basic Microbiol. 2013. doi:10.1002/jobm.201200275. [Epub ahead of print].

    PubMed  Google Scholar 

  • Fuhrman JA, Schwalbach MS, Stingl U. Proteorhodopsins: an array of physiological roles? Nat Rev Microbiol. 2008;6:488–94.

    CAS  PubMed  Google Scholar 

  • Jiménez DJ, Andreote FD, Chaves D, Montaña JS, Osorio-Forero C, et al. Structural and functional insights from the metagenome of an acidic hot spring microbial planktonic community in the Colombian Andes. PLoS ONE. 2012;7(12):e52069.

    PubMed Central  PubMed  Google Scholar 

  • Jones B, Renaut R. Hot springs and geysers. In: Reitner J, Thiel V, editors. Encyclopedia of geobiology. Berlin: Springer; 2011. doi:10.1007/SpringerReference_187284 2012-09-10 14:32:43 UTC.Springer Reference (Integrons as Repositories of Genetic Novelty).

    Google Scholar 

  • Jones DS, Albrecht HL, Dawson KS, Schaperdoth I, Freeman KH, et al. Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm. ISME J. 2012;6:158–170.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, et al. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. ISME J. 2011;5:1262–78.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, et al. Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. ISME J. 2011;5:1279–90.

    CAS  PubMed Central  PubMed  Google Scholar 

  • López-López O, Cerdán ME, González-Siso MI. Hot spring metagenomics. Life. 2013;2:308–20.

    Google Scholar 

  • Mathur J, Bizzoco RW, Ellis DG, Lipson DA, Poole AW, et al. Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs. Appl Environ Microbiol. 2007;73(8):2612–23.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Meyer B, Kuever J. Homology modeling of dissimilatory APS reductases (AprBA) of sulfur-33 oxidizing and sulfate-reducing prokaryotes. PLoS One. 2008;3(1):e1514.

    PubMed Central  PubMed  Google Scholar 

  • Montaña JS, Jiménez DJ, Hernandez M, Angel T, Baena S. Taxonomic and functional assignment of cloned sequences from high Andean forest soil metagenome. A Van Leeuw J Microb. 2012;101:205–15.

    Google Scholar 

  • Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GA, Kent J. Biodiversity hotspots for conservation priorities. Nature. 2000;403:853–8.

    CAS  PubMed  Google Scholar 

  • Norris PR. Acidophiles. In: Wiley J and Sons, editors. Encyclopedia of life sciences. 2001. p. 1-6. doi:10.1038/npg.els.000033. Integrons as Repositories of Genetic Novelty. Accessed 11 Nov 2011.

  • Pentecost A, Jones B, Renaut RW. What is a hot spring? Can J Earth Sci. 2003;40:1443–6.

    Google Scholar 

  • Rzonca B, Schulze-Makuch D. Correlation between microbiological and chemical parameters of some hydrothermal springs in New Mexico, USA. J Hidrol. 2003;280:272–84.

    CAS  Google Scholar 

  • Siering PL, Clarke JM, Wilson MS. Geochemical and biological diversity of acidic, hot springs in Lassen volcanic National Park. Geomicrobiol J. 2006;23(2):129–41.

    CAS  Google Scholar 

  • Stout LM, Blake RE, Greenwood JP, Martini AM, Rose EC. Microbial diversity of boron-rich volcanic hot springs of St. Lucia, Lesser Antilles. FEMS Microbiol Ecol. 2009;70(3):402–12.

    CAS  PubMed  Google Scholar 

  • Tirawongsaroj P, Sriprang R, Harnpicharnchai P, Thongaram T, Champreda V, et al. Novel thermophilic and thermostable lipolytic enzymes from a Thailand hot spring metagenomic library. J Biotechnol. 2008;133:42–9.

    CAS  PubMed  Google Scholar 

  • Wang S, Hou W, Dong H, Jiang H, Huang L, et al. Control of temperature on microbial community structure in hot springs of the Tibetan Plateau. PLoS ONE. 2013;8(5):e62901.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Wemheuer B, Taube R, Akyol P, Wemheuer F, Daniel R. Microbial diversity and biochemical potential encoded by thermal spring metagenomes derived from the Kamchatka Peninsula. Archaea. 2013:(136714).

    Google Scholar 

  • Xie W, Wang F, Guo L, Chen Z, Sievert SM, et al. Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. ISME J. 2011;5:414–26.

    PubMed Central  PubMed  Google Scholar 

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Correspondence to Diego Javier Jiménez .

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Jiménez, D.J., Zambrano, M.M. (2015). Metagenome of Acidic Hot Spring Microbial Planktonic Community: Structural and Functional Insights. In: Nelson, K.E. (eds) Encyclopedia of Metagenomics. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-7478-5_173

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