This is a preview of subscription content, log in via an institution to check access.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Recommended Reading
Chen H, Friedman W, Hersh SS, editors. Fuller medical informatics: knowledge management and data mining in biomedicine. Secaucus: Springer; 2005.
Cohen AM, Hersh WR. A survey of current work in biomedical text mining. Brief Bioinform. 2005;6(1):57–71.
Donaldson I, Martin J, deBruijn B, Wolting C, Lay V, Tuekam B, Zhang S, Baskin B, Bader G, Michalickova K, et al. PreBIND and textomy – mining the biomedical literature for protein-protein interactions using a support vector machine. BMC Bioinf. 2003;4(1):11.
Friedman C, Kra P, Yu H, Krauthammer M, Rzhetsky A. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics. 2001;17(Suppl 1):S74–82.
Gaizauskas R, Demetriou G, Artymiuk PJ, Willett P. Protein structures and information extraction from biological texts: the PASTA system. Bioinformatics. 2003;19(1):135–43.
Hearst M. Untangling text data mining. In: Proceedings of the 27th Annual Meeting of the Association for Computational Linguistics; 1999.
Hersh W. Information retrieval: a health and biomedical perspective. New York: Springer; 2003.
Hersh W, Cohen A, Roberts P, Rekapalli HK. TREC 2006 genomics track overview. In: Proceedings of the Text Retrieval Conference; 2006. Available at: http://trec.nist.gov/pubs/trec15/papers/GEO06. OVERVIEW.pdf
Hoffmann R, Valencia A. A gene network for navigating the literature. Nat Genet. 2004;36(7):664.
Hristovski D, Peterlin B. Literature-based disease candidate gene discovery. In: Proceedings of the Medinfo; 2004. p. 1649.
Natarajan J, Berrar D, Hack CJ, Dubizky W. Knowledge discovery in biology and biotechnology texts: a review of techniques, evaluation strategies, and applications. Crit Rev Biotechnol. 2005;25(1–2):31–52.
Smalheiser N, Swanson D. Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses. Comput Methods Prog Biomed. 1998;57(3):149–53.
Swanson DR Complementary structure in disjoint science literatures. In: Proceedings of the 23rd Annual International ACM SIGIR Conference on Research and Development in Information Retrieval; 1990. p. 280–9.
Yeh AS, Hirschman L, Morgan AA. Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup. Bioinformatics. 2003;19(Suppl 1):i331–9.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Section Editor information
Rights and permissions
Copyright information
© 2018 Springer Science+Business Media, LLC, part of Springer Nature
About this entry
Cite this entry
Zhou, L., Xu, H. (2018). Biomedical Scientific Textual Data Types and Processing. In: Liu, L., Özsu, M.T. (eds) Encyclopedia of Database Systems. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-8265-9_495
Download citation
DOI: https://doi.org/10.1007/978-1-4614-8265-9_495
Published:
Publisher Name: Springer, New York, NY
Print ISBN: 978-1-4614-8266-6
Online ISBN: 978-1-4614-8265-9
eBook Packages: Computer ScienceReference Module Computer Science and Engineering