Abstract
The phylum Synergistetes has been characterized in 2009 and currently groups 12 genera and 20 species of Gram-negative, anaerobic bacteria with various morphologies and metabolisms, i.e., Aminiphilus, Aminobacterium, Aminomonas, Anaerobaculum, Cloacibacillus, Dethiosulfovibrio, “Fretibacterium,” Jonquetella, Pyramidobacter, Synergistes, Thermanaerovibrio, and Thermovirga. In addition, the genus Acetomicrobium has to be reclassified as belonging to this phylum. Cells are mainly rods with various shapes and are characterized by their ability to utilize amino acids as source for energy. Low cultivability accounts for the global lack of knowledge on most members of this phylum, and data currently available mainly arise from cultivation-independent studies. It is noteworthy that members of Synergistetes are widely distributed but more usually represent a minor population within inhabited ecosystems. Four types of habitats could be delineated depending on isolate or clone origin, including sludge and wastewater from anaerobic digesters, natural springs, natural seawater and sulfur mats, water related to petroleum and gas production facilities, and host-associated microbiota, Synergistes being more usually recovered from a unique of these site types according to the taxon considered. Although no data are currently available regarding their virulence in different hosts, their recovery in various physiological and pathophysiological conditions witnessed for a probable opportunistic pathogenic behavior.
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References
Allison MJ, Hammond AC, Jones RJ (1990) Detection of rumen bacteria that degrade toxic dihydroxypyridine compounds produced from mimosine. Appl Environ Microbiol 56:590–594
Allison MJ, Mayberry WR, McSweeney CS, Stahl DA (1992) Synergistes jonesii, gen. nov., sp. nov.: a rumen bacterium that degrades toxic pyridinediols. Syst Appl Microbiol 15:522–529
Allison MJ, Mayberry WR, McSweeney CS, Stahl DA (1993) In validation of the publication of new names and new combinations previously effectively published outside the IJSB. List no. 45. Int J Syst Bacteriol 43:398–399
Anderson RC, Anderson TJ, Nisbet DJ, Kibbe AS, Elrod D, Wilkinson G (2001) Drought associated poisoning of cattle in south Texas by the high quality forage legume leucaena leucocephala. Vet Hum Toxicol 43:95–96
Aquino AR, Lima KC, Paiva MS, Rôças IN, Siqueira JF Jr (2011) Molecular survey of atheromatous plaques for the presence of DNA from periodontal bacterial pathogens, archaea and fungi. J Periodontal Res 46:303–309
Baena S, Fardeau ML, Labat M, Ollivier B, Thomas P, Garcia JL, Patel BK (1998) Aminobacterium colombiense gen. nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge. Anaerobe 4:241–250
Baena S, Fardeau ML, Labat M, Ollivier B, Garcia JL, Patel BK (1999a) In validation of the publication of new names and new combinations previously effectively published outside the IJSB. List no. 71. Int J Syst Bacteriol 49:1325–1326
Baena S, Fardeau ML, Ollivier B, Labat M, Thomas P, Garcia JL, Patel BK (1999b) Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium. Int J Syst Bacteriol 49:975–982
Baena S, Fardeau ML, Woo TH, Ollivier B, Labat M, Patel BK (1999c) Phylogenetic relationships of three amino-acid-utilizing anaerobes, Selenomonas acidaminovorans, ‘Selenomonas acidaminophila’ and Eubacterium acidaminophilum, as inferred from partial 16S rDNA nucleotide sequences and proposal of Thermanaerovibrio acidaminovorans gen. nov., comb. nov. and Anaeromusa acidaminophila gen. nov., comb. nov. Int J Syst Bacteriol 49:969–974
Baena S, Fardeau ML, Labat M, Ollivier B, Garcia JL, Patel BK (2000) Aminobacterium mobile sp. nov., a new anaerobic amino-acid-degrading bacterium. Int J Syst Evol Microbiol 50:259–264
Baumgartner A, Thurnheer T, Lüthi-Schaller H, Gmür R, Belibasakis GN (2012) The phylum Synergistetes in gingivitis and necrotizing ulcerative gingivitis. J Med Microbiol 61:1600–1609
Beiko RG (2011) Telling the whole story in a 10,000-genome world. Biol Direct 6:34
Berlanga M, Paster BJ, Guerrero R (2009) The taxophysiological paradox: changes in the intestinal microbiota of the xylophagous cockroach Cryptocercus punctulatus depending on the physiological state of the host. Int Microbiol 12:227–236
Berlanga M, Paster BJ, Grandcolas P, Guerrero R (2011) Comparison of the gut microbiota from soldier and worker castes of the termite Reticulitermes grassei. Int Microbiol 14:83–93
Bhandari V, Gupta RS (2012) Molecular signatures for the phylum Synergistetes and some of its subclades. Antonie Van Leeuwenhoek 102:517–540
Caccavo F Jr, Coates JD, Rossello-Mora RA, Ludwig W, Schleifer KH, Lovley DR, McInerney MJ (1996) Geovibrio ferrireducens, a phylogenetically distinct dissimilatory Fe(III)-reducing bacterium. Arch Microbiol 165:370–376
Cardinali-Rezende J, Debarry RB, Colturato LF, Carneiro EV, Chartone-Souza E, Nascimento AM (2009) Molecular identification and dynamics of microbial communities in reactor treating organic household waste. Appl Microbiol Biotechnol 84:777–789
Casarin RC, Barbagallo A, Meulman T, Santos VR, Sallum EA, Nociti FH, Duarte PM, Casati MZ, Gonçalves RB (2013) Subgingival biodiversity in subjects with uncontrolled type-2 diabetes and chronic periodontitis. J Periodontal Res 48:30–36
Chaiyapechara S, Rungrassamee W, Suriyachay I, Kuncharin Y, Klanchui A, Karoonuthaisiri N, Jiravanichpaisal P (2012) Bacterial community associated with the intestinal tract of P. monodon in commercial farms. Microb Ecol 63:938–953
Chertkov O, Sikorski J, Brambilla E, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Spring S, Rohde M, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2010) Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Stand Genomic Sci 15:280–289
Chovatia M, Sikorski J, Schröder M, Lapidus A, Nolan M, Tice H, Glavina Del Rio T, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Detter JC, Brettin T, Rohde M, Göker M, Spring S, Bristow J, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Eisen JA (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Stand Genomic Sci 22:254–261
Cytryn E, Gelfand I, Barak Y, van Rijn J, Minz D (2003) Diversity of microbial communities correlated to physiochemical parameters in a digestion basin of a zero-discharge mariculture system. Environ Microbiol 5:55–63
Cytryn E, van Rijn J, Schramm A, Gieseke A, de Beer D, Minz D (2005) Identification of bacteria potentially responsible for oxic and anoxic sulfide oxidation in biofilters of a recirculating mariculture system. Appl Environ Microbiol 71:6134–6141
Dahle H, Birkeland NK (2006) Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, amino-acid-degrading bacterium isolated from a north Sea oil well. Int J Syst Evol Microbiol 56:1539–1545
Dahle H, Garshol F, Madsen M, Birkeland NK (2008) Microbial community structure analysis of produced water from a high-temperature north Sea oil-field. Antonie Van Leeuwenhoek 93:37–49
Davis CK, Webb RI, Sly LI, Denman SE, McSweeney CS (2012a) Isolation and survey of novel fluoroacetate-degrading bacteria belonging to the phylum Synergistetes. FEMS Microbiol Ecol 80:671–684
Davis JP, Struchtemeyer CG, Elshahed MS (2012b) Bacterial communities associated with production facilities of two newly drilled thermogenic natural gas wells in the barnett shale (Texas, USA). Microb Ecol 64:942–954
de Lillo A, Ashley FP, Palmer RM, Munson MA, Kyriacou L, Weightman AJ, Wade WG (2006) Novel subgingival bacterial phylotypes detected using multiple universal polymerase chain reaction primer sets. Oral Microbiol Immunol 21:61–68
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG (2010) The human oral microbiome. J Bacteriol 192:5002–5017
Díaz C, Baena S, Fardeau ML, Patel BK (2007) Aminiphilus circumscriptus gen. nov., sp. nov., an anaerobic amino-acid-degrading bacterium from an upflow anaerobic sludge reactor. Int J Syst Evol Microbiol 57:1914–1918
Díaz-Cárdenas C, López G, Patel BK, Baena S (2010) Dethiosulfovibrio salsuginis sp. nov., an anaerobic, slightly halophilic bacterium isolated from a saline spring. Int J Syst Evol Microbiol 60:850–853
Downes J, Vartoukian SR, Dewhirst FE, Izard J, Chen T, Yu WH, Sutcliffe IC, Wade WG (2009) Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum ‘Synergistetes’ isolated from the human oral cavity. Int J Syst Evol Microbiol 59:972–980
Fiala G, Woese CR, Langworthy TA, Stetter KO (1990) Flexistipes sinusarabici a novel genus and species of eubacteria occurring in the Atlantis II deep brines of the Red Sea. Arch Microbiol 154:120–126
Ganesan A, Chaussonnerie S, Tarrade A, Dauga C, Bouchez T, Pelletier E, Le Paslier D, Sghir A (2008) Cloacibacillus evryensis gen. nov., sp. nov., a novel asaccharolytic, mesophilic, amino-acid-degrading bacterium within the phylum ‘Synergistetes’, isolated from an anaerobic sludge digester. Int J Syst Evol Microbiol 58:2003–2012
Garrity GM, Bell JA, Lilburn TG (2004) Taxonomic outline of the prokaryotes. In: Bergey’s Manual Trust (ed) Bergey’s manual of systematic bacteriology, 2nd edn. Release 5.0. Springer, New York (available at URL: http://www.bergeys.org/outlines.html)
Godon JJ, Morinière J, Moletta M, Gaillac M, Bru V, Delgènes JP (2005) Rarity associated with specific ecological niches in the bacterial world: the Synergistes example. Environ Microbiol 7:213–224
Godoy-Vitorino F, Goldfarb KC, Karaoz U, Leal S, Garcia-Amado MA, Hugenholtz P, Tringe SG, Brodie EL, Dominguez-Bello MG (2012) Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. ISME J 6:531–541
Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Chang YJ, Jeffries CD, Brambilla EM, Rohde M, Spring S, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2012) Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T). Stand Genomic Sci 25:230–239
Greene AC, Patel BK, Sheehy AJ (1997) Deferribacter thermophilus gen. nov., sp. nov., a novel thermophilic manganese- and iron-reducing bacterium isolated from a petroleum reservoir. Int J Syst Bacteriol 47:505–509
Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, Yang ZK, Podar M, Leys EJ (2012) Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J 6:1176–1185
Guangsheng C, Plugge CM, Roelofsen W, Houwen FP, Stams AJM (1992) Selenomonas acidaminovorans sp. nov., a versatile thermophilic proton-reducing anaerobe able to grow by decarboxylation of succinate to propionate. Arch Microbiol 157:169–175
Gupta RS (2011) Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes. Antonie Van Leeuwenhoek 100:171–182
Hammond AC (1995) Leucaena toxicosis and its control in ruminants. J Anim Sci 73:1487–1492
Holdeman LV, Moore WEC (1972) Anaerobe laboratory manual. Virginia, Anaerobe Laboratory, Virginia Polytechnic Institute and State University, Blacksburg
Hongoh Y, Sato T, Dolan MF, Noda S, Ui S, Kudo T, Ohkuma M (2007) The motility symbiont of the termite gut flagellate Caduceia versatilis is a member of the “Synergistes” group. Appl Environ Microbiol 73:6270–6276
Horz HP, Citron DM, Warren YA, Goldstein EJ, Conrads G (2006) Synergistes group organisms of human origin. J Clin Microbiol 44:2914–2920
Hugenholtz P, Hooper SD, Kyrpides NC (2009) Focus: Synergistetes. Environ Microbiol 11:1327–1329
Human Microbiome Project Consortium (2012) Structure, function and diversity of the healthy human microbiome. Nature 486:207–214
Hungate RE (1969) A roll tube method for cultivation of strict anaerobes. In: Norris JB, Ribbons DW (eds) Methods in microbiology. Academic, New York, pp 117–132
Hutter G, Schlagenhauf U, Valenza G, Horn M, Burgemeister S, Claus H, Vogel U (2003) Molecular analysis of bacteria in periodontitis: evaluation of clone libraries, novel phylotypes and putative pathogens. Microbiology 149:67–75
Jones RJ, Lowry JB (1984) Australian goats detoxify the goitrogen 3-hydroxy-4(1H) pyridone (DHP) after rumen infusion from an Indonesian goat. Experientia 40:1435–1436
Jones RJ, Megarrity RG (1986) Successful transfer of DHP-degrading bacteria from Hawaiian goats to Australian ruminants to overcome the toxicity of Leucaena. Aust Vet J 63:259–262
Jumas-Bilak E, Carlier JP, Jean-Pierre H, Citron D, Bernard K, Damay A, Gay B, Teyssier C, Campos J, Marchandin H (2007) Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum ‘Synergistetes’ isolated from man. Int J Syst Evol Microbiol 57:2743–2748
Jumas-Bilak E, Roudière L, Marchandin H (2009) Description of ‘Synergistetes’ phyl. nov. and emended description of the phylum ‘Deferribacteres’ and of the family Syntrophomonadaceae, phylum ‘Firmicutes’. Int J Syst Evol Microbiol 59:1028–1035
Kevbrin VV, Zavarzin GA (1992) The effect of sulfur compounds on growth of halophilic homoacetic bacterium Acetohalobium arabaticum. Microbiology 61:812–817 (English translation of Mikrobiologiya)
Koyanagi T, Sakamoto M, Takeuchi Y, Ohkuma M, Izumi Y (2010) Analysis of microbiota associated with peri-implantitis using 16S rRNA gene clone library. J Oral Microbiol 24:2
Krakat N, Schmidt S, Scherer P (2011) Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage. Bioresour Technol 102:5692–5701
Kumar PS, Griffen AL, Barton JA, Paster BJ, Moeschberger ML, Leys EJ (2003) New bacterial species associated with chronic periodontitis. J Dent Res 82:338
Kunisawa T (2011) Inference of the phylogenetic position of the phylum Deferribacteres from gene order comparison. Antonie Van Leeuwenhoek 99:417–422
Labutti K, Mayilraj S, Clum A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A (2010) Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). Stand Genomic Sci 3:85–92
Li RW, Connor EE, Li C, Baldwin Vi RL, Sparks ME (2012) Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools. Environ Microbiol 14:129–139
Looft T, Levine UY, Stanton TB (2013) Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus. Int J Syst Evol Microbiol 63:1960–1966
Magot M, Ravot G, Campaignolle X, Ollivier B, Patel BK, Fardeau ML, Thomas P, Crolet JL, Garcia JL (1997) Dethiosulfovibrio peptidovorans gen. nov., sp. nov., a new anaerobic, slightly halophilic, thiosulfate-reducing bacterium from corroding offshore oil wells. Int J Syst Bacteriol 47:818–824
Mansfield JM, Campbell JH, Bhandari AR, Jesionowski AM, Vickerman MM (2012) Molecular analysis of 16S rRNA genes identifies potentially periodontal pathogenic bacteria and archaea in the plaque of partially erupted third molars. J Oral Maxillofac Surg 70:1507–1514
Marchandin H, Damay A, Roudière L, Teyssier C, Zorgniotti I, Dechaud H, Jean-Pierre H, Jumas-Bilak E (2010) Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin. Res Microbiol 161:91–100
Maune MW, Tanner RS (2012) Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum. Int J Syst Evol Microbiol 62:832–838
McSweeney CS, Allison MJ, Mackie RI (1993a) Amino acid utilization by the ruminal bacterium Synergistes jonesii strain 78-1. Arch Microbiol 159:131–135
McSweeney CS, Mackie RI, Odenyo AA, Stahl DA (1993b) Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantitation of the ruminal bacterium Synergistes jonesii in a mixed-population chemostat. Appl Environ Microbiol 59:1607–1612
Menes RJ, Muxí L (2002) Anaerobaculum mobile sp. nov., a novel anaerobic, moderately thermophilic, peptide-fermenting bacterium that uses crotonate as an electron acceptor, and emended description of the genus Anaerobaculum. Int J Syst Evol Microbiol 52:157–164
Mnif S, Bru-Adan V, Godon JJ, Sayadi S, Chamkha M (2012) Characterization of the microbial diversity in production waters of mesothermic and geothermic Tunisian oilfields. J Basic Microbiol 53:45–61
Munson MA, Pitt-Ford T, Chong B, Weightman AJ, Wade WG (2002) Molecular and cultural analysis of the microflora associated with endodontic infections. J Dent Res 81:761–766
Munson MA, Banerjee A, Watson TF, Wade WG (2004) Molecular analysis of the microflora associated with dental caries. J Clin Microbiol 42:3023–3029
Myhr S, Torsvik T (2000) Denitrovibrio acetiphilus, a novel genus and species of dissimilatory nitrate-reducing bacterium isolated from an oil reservoir model column. Int J Syst Evol Microbiol 50:1611–1619
Orphan VJ, Taylor LT, Hafenbradl D, Delong EF (2000) Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Appl Environ Microbiol 66:700–711
Palatsi J, Viñas M, Guivernau M, Fernandez B, Flotats X (2011) Anaerobic digestion of slaughterhouse waste: main process limitations and microbial community interactions. Bioresour Technol 102:2219–2227
Paster BJ, Boches SK, Galvin JL, Ericson RE, Lau CN, Levanos VA, Sahasrabudhe A, Dewhirst FE (2001) Bacterial diversity in human subgingival plaque. J Bacteriol 183:3770–3783
Pfennig N, Biebl H (1976) Desulfuromonas acetoxidans gen. nov. and sp. nov., a new anaerobic, sulfur-reducing, acetate-oxidizing bacterium. Arch Microbiol 110:3–12
Pitluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Chertkov O, Goodwin L, Tapia R, Han C, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Pukall R, Spring S, Rohde M, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2010) Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). Stand Genomic Sci 3:285–293
Plugge CM, Stams AJ (2001) Arginine catabolism by Thermanaerovibrio acidaminovorans. FEMS Microbiol Lett 195:259–262
Plugge CM, van Leeuwen JM, Hummelen T, Balk M, Stams AJ (2001) Elucidation of the pathways of catabolic glutamate conversion in three thermophilic anaerobic bacteria. Arch Microbiol 176:29–36
Rees GN, Patel BK, Grassia GS, Sheehy AJ (1997) Anaerobaculum thermoterrenum gen. nov., sp. nov., a novel, thermophilic bacterium which ferments citrate. Int J Syst Bacteriol 47:150–154
Rice WC, Galyean ML, Cox SB, Dowd SE, Cole NA (2012) Influence of wet distillers grains diets on beef cattle fecal bacterial community structure. BMC Microbiol 12:25
Rivière D, Desvignes V, Pelletier E, Chaussonnerie S, Guermazi S, Weissenbach J, Li T, Camacho P, Sghir A (2009) Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME J 3:700–714
Rôças IN, Siqueira JF Jr (2005) Detection of novel oral species and phylotypes in symptomatic endodontic infections including abscesses. FEMS Microbiol Lett 250:279–285
Rôças IN, Siqueira JF Jr (2010) Identification of bacteria enduring endodontic treatment procedures by a combined reverse transcriptase-polymerase chain reaction and reverse-capture checkerboard approach. J Endod 36:45–52
Sakamoto M, Siqueira JF Jr, Rocas IN, Benno Y (2008) Molecular analysis of the root canal microbiota associated with endodontic treatment failures. Oral Microbiol Immunol 23:275–281
Sayeh R, Birrien JL, Alain K, Barbier G, Hamdi M, Prieur D (2010) Microbial diversity in Tunisian geothermal springs as detected by molecular and culture-based approaches. Extremophiles 14:501–514
Scherr KE, Lundaa T, Klose V, Bochmann G, Loibner AP (2012) Changes in bacterial communities from anaerobic digesters during petroleum hydrocarbon degradation. J Biotechnol 157:564–572
Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, Huttenhower C, Izard J (2012) Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol 13:R42
Shi R, Zhang Y, Yang W, Xu H (2012) Microbial community characterization of an UASB treating increased organic loading rates of vitamin C biosynthesis wastewater. Water Sci Technol 65:254–261
Soutschek E, Winter J, Schindler F, Kandler O (1984) Acetomicrobium flavidum, gen. nov., sp. nov., a thermophilic, anaerobic bacterium from sewage sludge, forming acetate, CO2 and H2 from glucose. Syst Appl Microbiol 5:377–390
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690
Stevenson BS, Drilling HS, Lawson PA, Duncan KE, Parisi VA, Suflita JM (2011) Microbial communities in bulk fluids and biofilms of an oil facility have similar composition but different structure. Environ Microbiol 13:1078–1790
Surkov AV, Böttcher ME, Kuever J (2000) Stable sulfur isotope fractionation during the reduction of thiosulfate by Dethiosulfovibrio russensis. Arch Microbiol 174:448–451
Surkov AV, Dubinina GA, Lysenko AM, Glöckner FO, Kuever J (2001) Dethiosulfovibrio russensis sp. nov., Dethiosulfovibrio marinus sp. nov. and Dethiosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from ‘Thiodendron’ sulfur mats in different saline environments. Int J Syst Evol Microbiol 51:327–337
Surkov AV, Böttcher ME, Kuever J (2012) Sulphur isotope fractionation during the reduction of elemental sulphur and thiosulphate by Dethiosulfovibrio spp. Isotopes Environ Health Stud 48:65–75
Sutcliffe IC (2010) A phylum level perspective on bacterial cell envelope architecture. Trends Microbiol 18:464–470
Tang Y, Shigematsu T, Morimura S, Kida K (2005) Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation. J Biosci Bioeng 99:150–164
Tang YQ, Ji P, Hayashi J, Koike Y, Wu XL, Kida K (2011) Characteristic microbial community of a dry thermophilic methanogenic digester: its long-term stability and change with feeding. Appl Microbiol Biotechnol 91:1447–1461
Teyssier C, Marchandin H, Masnou A, Jeannot JL, Simeon de Buochberg M, Jumas-Bilak E (2005) Pulsed-field gel electrophoresis to study the diversity of whole-genome organization in the genus Ochrobactrum. Electrophoresis 26:2898–2907
Vartoukian SR, Palmer RM, Wade WG (2007) The division “Synergistes”. Anaerobe 13:99–106
Vartoukian SR, Palmer RM, Wade WG (2009) Diversity and morphology of members of the phylum “Synergistetes” in periodontal health and disease. Appl Environ Microbiol 75:3777–3786
Vartoukian SR, Palmer RM, Wade WG (2010) Cultivation of a Synergistetes strain representing a previously uncultivated lineage. Environ Microbiol 12:916–928
Vartoukian SR, Downes J, Palmer RM, Wade WG (2013) Fretibacterium fastidiosum gen. nov., sp. nov., isolated from the human oral cavity. Int J Syst Evol Microbiol 63:458–463
Vianna ME, Conrads G, Gomes BP, Horz HP (2007) Quantification and characterization of synergistes in endodontic infections. Oral Microbiol Immunol 22:260–265
Wallace JR (2008) Gut microbiology—broad genetic diversity, yet specific metabolic niches. Animal 2:661–668
Webster G, Sass H, Cragg BA, Gorra R, Knab NJ, Green CJ, Mathes F, Fry JC, Weightman AJ, Parkes RJ (2011) Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions. FEMS Microbiol Ecol 77:248–263
Weiss A, Jérôme V, Freitag R, Mayer HK (2008) Diversity of the resident microbiota in a thermophilic municipal biogas plant. Appl Microbiol Biotechnol 81:163–173
Wienemann T, Schmitt-Wagner D, Meuser K, Segelbacher G, Schink B, Brune A, Berthold P (2011) The bacterial microbiota in the ceca of Capercaillie (Tetrao urogallus) differs between wild and captive birds. Syst Appl Microbiol 34:542–551
Winter J, Braun E, Zabel HP (1987) Acetomicrobium faecalis sp. nov., a strictly anaerobic bacterium from sewage sludge, producing ethanol from pentoses. Syst Appl Microbiol 9:71–76
Wolin EA, Wolin MJ, Wolfe RS (1963) Formation of methane by bacterial extracts. J Biol Chem 238:2882–2888
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D’haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA (2009) A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462:1056–1060
Yamane K, Maki H, Nakayama T, Nakajima T, Nomura N, Uchiyama H, Kitaoka M (2008) Diversity and similarity of microbial communities in petroleum crude oils produced in Asia. Biosci Biotechnol Biochem 72:2831–2839
Yoshida N, Takahashi N, Hiraishi A (2005) Phylogenetic characterization of a polychlorinated-dioxin-dechlorinating microbial community by use of microcosm studies. Appl Environ Microbiol 71:4325–4334
You M, Mo S, Watt RM, Leung WK (2013) Prevalence and diversity of Synergistetes taxa in periodontal health and disease. J Periodontal Res 48:159–168
Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012) Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. J Biotechnol 158:248–258
Zavarzina DG, Zhilina TN, Tourova TP, Kuznetsov BB, Kostrikina NA, Bonch-Osmolovskaya EA (2000) Thermanaerovibrio velox sp. nov., a new anaerobic, thermophilic, organotrophic bacterium that reduces elemental sulfur, and emended description of the genus Thermanaerovibrio. Int J Syst Evol Microbiol 50:1287–1295
Zhao H, Yang D, Woese CR, Bryant MP (1993) Assignment of fatty acid-beta-oxidizing syntrophic bacteria to Syntrophomonadaceae fam. nov. on the basis of 16S rRNA sequence analyses. Int J Syst Bacteriol 43:278–286
Zhao G, Ma F, Wei L, Chua H (2012) Using rice straw fermentation liquor to produce bioflocculants during an anaerobic dry fermentation process. Bioresour Technol 113:83–88
Zijnge V, van Leeuwen MB, Degener JE, Abbas F, Thurnheer T, Gmür R, Harmsen HJ (2010) Oral biofilm architecture on natural teeth. PLoS One 5:e9321
Acknowledgments
We would like to sincerely thank several collaborators whose work for phenotypic or genotypic characterization of anaerobic clinical isolates contributed to support the description of the phylum Synergistetes, Jean-Philippe Carlier, Audrey Damay, Bernard Gay, Hélène Jean-Pierre, Isabelle Zorgniotti, and Laurent Roudière.
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Jumas-Bilak, E., Marchandin, H. (2014). The Phylum Synergistetes. In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38954-2_384
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