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Universal Primer Applications for Pyrosequencing®

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Pyrosequencing® Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 373))

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Abstract

Pyrosequencing® is a high-throughput technique for single-nucleotide polymorphism (SNP) genotyping, DNA sequencing, and SNP allele frequency and DNA methylation assays. The Pyrosequencing assay involves initially purifying PCR-generated single-strand DNA labeled with biotin as a sequencing template. The disadvantage of the synthesis of a biotinylated sequence-specific primer to assay each DNA variant lies in costs and time consumption. To overcome this problem, methodology has been developed to generate biotinylated Pyrosequencing DNA templates using a universal biotinylated primer. Using this methodology, biotinylated DNA fragments can be generated without the use of sequence-specific biotinylated primers for each DNA variant.

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References

  1. Langaee, T. and Ronaghi, M. (2005) Genetic variation analyses by Pyrosequencing. Mutat. Res. 573, 96–102.

    Article  CAS  PubMed  Google Scholar 

  2. Diggle, M. A. and Clarke, S. C. (2004) Pyrosequencing: sequence typing at the speed of light. Mol. Biotechnol. 28, 129–137.

    Article  CAS  PubMed  Google Scholar 

  3. Ronaghi, M. (2001) Pyrosequencing sheds light on DNA sequencing. Genome Res. 11, 3–11.

    Article  CAS  PubMed  Google Scholar 

  4. Guo, D. C. and Milewicz, D. M. (2003) Methodology for using a universal primer to label amplified DNA segments for molecular analysis. Biotechnol. Lett. 25, 2079–2083.

    Article  CAS  PubMed  Google Scholar 

  5. Schuelke, M. (2000) An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18, 233–234.

    Article  CAS  PubMed  Google Scholar 

  6. Pacey-Miller, T. and Henry, R. (2003) Single-nucleotide polymorphism detection in plants using a single-stranded Pyrosequencing protocol with a universal biotinylated primer. Anal. Biochem. 317, 166–170.

    Article  PubMed  Google Scholar 

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© 2007 Humana Press Inc.

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Guo, DC., Milewicz, D.M. (2007). Universal Primer Applications for Pyrosequencing®. In: Walker, J.M., Marsh, S. (eds) Pyrosequencing® Protocols. Methods in Molecular Biology™, vol 373. Humana Press. https://doi.org/10.1385/1-59745-377-3:57

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  • DOI: https://doi.org/10.1385/1-59745-377-3:57

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-645-0

  • Online ISBN: 978-1-59745-377-6

  • eBook Packages: Springer Protocols

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