Abstract
Gel electrophoretic analysis of proteins is a well-established method for separating, quantifying, identifying, comparing, and characterizing proteins. This form of analysis consists of a diverse class of methods, with new approaches and improvements being frequently added, including computer software dedicated to the analysis of protein gels. Protein electrophoresis involves four principal steps: protein harvesting, in-gel separation, visualization of separated proteins, and data collection and analysis. Proteins are extremely heterogeneous, and no single method will recover all cellular proteins equally effectively. In its native state, a protein may be soluble, membrane-, or organelle-bound and may show posttranslational and pH-dependent modifications.
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References
Bollag, D. M. and Edelstein, S. J. Protein Methods. Wiley-Liss, New York, 1991.
Ramsby, M. L. and Makowski, G. S. Differential detergent fractionation of eukaryotic cells, in 2-D Proteome Analysis Protocols (Link, A. J., ed.), Humana Press, Totowa, New Jersey, 1999, pp. 53–66.
Qoronfleh, M. W., Benton, B., Ignacio, R., and Kaboord, B. (2003) Selective enrichment of membrane proteins by partition phase separation for proteomic studies. J. Biomed. Biotechnol. 4, 249–255.
Guttman, A. (2003) Gel and polymer-solution mediated separation of biopolymers by capillary electrophoresis. J. Chromatogr. Sci. 41, 449–459.
Unlu, M., Morgan, M. E., and Minden, J. S. (1997) Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18, 2071–2077.
Swiss Institute of Bioinformatics. Tools and software packages on Expert Protein Analysis System (ExPASy) Proteomics Server. Available at ca.expasy.org.
Kryndushkin, D. S., Alexandrov, I. M., Ter-Avanesyan, M. D., and Kushnirov, V. V. (2003) Yeast [PSI +] prion aggregates are formed by small Sup35 polymers fragmented by Hsp104. J. Biol. Chem. 278, 49636–49643.
Manabe, T., Yamaguchi, N., Mukai, J., Hamada, O., and Tani, O. (2003) Detection of protein-protein interactions and a group of immunoglobulin G-associated minor proteins in human plasma by nondenaturing and denaturing two-dimensional gel electrophoresis. Proteomics 3, 832–846.
Zhu, H., Bilgin, M., and Snyder, M. (2003) Proteomics. Annu. Rev. Biochem. 72, 783–812.
Binz, P. A., Hochstrasser, D. F., and Appel, R. D. (2003) Mass spectrometry-based proteomics: Current status and potential use in clinical chemistry. Clin. Chem. Lab. Med. 41, 1540–1551.
Nørregaard Jensen, O., Wilm, M., Shevchenko, A., and Mann, M. Sample preparation methods for mass spectrometric peptide mapping directly from 2-DE gels, in 2-D Proteome Analysis Protocols (Link, A. J., ed.), Humana Press, Totowa, New Jersey, 1999, pp. 53–66.
Bradford, M. M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248–254.
Towbin, H., Staehelin, T., and Gordon, J. (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: Procedure and some applications. Proc. Natl. Acad. Sci. USA 76, 4350–4354.
Young, N., Chang, Z., and Wishart, D. S. (2004) GelScape: a web-based server for interactively annotating, manipulating, comparing and archiving 1D and 2D gel images. Bioinformatics 20, 976–978.
Lemkin, P. F. and Thornwall, G. (1999) Flicker image comparison of 2-D gel images for putative protein identification using the 2DWG meta-database. Mol. Biotechnol. 12, 159–172.
Ramagli, L. S. Quantifying protein in 2-D PAGE solubilization buffers, in 2-D Proteome Analysis Protocols (Link, A. J., ed.), Humana Press, Totowa, New Jersey, 1999, pp. 99–103.
Sarmiento, M. High resolution, 2-D protein electrophoresis using nondedicted equipment, in 2-D Proteome Analysis Protocols (Link, A. J., ed.), Humana Press, Totowa, New Jersey, 1999, pp. 133–145.
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O’Callaghan, K.J., Byrne, L.J., Tuite, M.F. (2005). Extraction and Denaturing Gel Electrophoretic Methodology for the Analysis of Yeast Proteins. In: Smales, C.M., James, D.C. (eds) Therapeutic Proteins. Methods in Molecular Biology™, vol 308. Humana Press. https://doi.org/10.1385/1-59259-922-2:357
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DOI: https://doi.org/10.1385/1-59259-922-2:357
Publisher Name: Humana Press
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