Abstract
Differential screening of entire cell proteomes by two-dimensional gel electrophoresis (2-DE) often leads to the identification of several differentially expressed but functionally unrelated target proteins. Hence, this approach often fails to give a comprehensive picture of the underlying biological mechanism. Thus, the level of complexity of the entire cell proteome needs to be reduced (1). Cell fractionation is both a way of reducing complexity and a way to target a specific cellular compartment. The purification of nucleoli from three Hodgkin nonadherent lymphoma cell lines is presented here. It is based on an original method from Muramatsu and Onishi (2) and has been adapted from a protocol developed for HeLa cells (3).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Dreger, M. (2003) Subcellular proteomics. Mass Spectrom. Rev. 22, 27–56.
Muramatsu, M. and Onishi, T. (1978) Isolation and purification of nucleoli and nucleolar chromatin from mammalian cells. Methods Cell. Biol. 17, 141–161.
Scherl, A., Coute, Y., Deon, C., et al. (2002) Functional proteomic analysis of human nucleolus. Mol. Biol. Cell 13, 4100–4109.
Deshusses, J. M., Burgess, J. A., Scherl, A., Wenger, Y., Walter, N., Converset, V., Paesano, S., Corthals, G. L., Hochstrasser, D. H., and Sanchez, J. C. (2003) Exploitation of specific properties of trifluoroethanol for extraction and separation of membrane proteins. Proteomics 3, 1418–1424.
Rabilloud, T., Adessi, C., Giraudel, A., and Lunardi, J. (1997) Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 18, 307–316.
Muramatsu, M. and Busch, H. (1982) Isolation, composition, and function of nucleoli of tumors and other tissues. Methods Cancer Res. 2, 303–359.
Jung, E., Hooghland, C., Chiappe, D., Sanchez, J. C., and Hochstrasser, D. F. (2000) The establishment of a human liver nuclei two-dimensional electrophoresis reference map. Electrophoresis 16, 3483–3487.
Burgess, R. R. (1991) Use of polyethyleneimine in purification of DNA-binding proteins. Methods Enzymol. 208, 3–10.
Burkhard, P. R., Sanchez, J. C., Landis, T., and Hochstrasser, D. F. (2001) CSF detection of the 14-3-3 protein in unselected patients with dementia. Neurology 56, 1528–1533.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2005 Humana Press Inc., Totowa, NJ
About this protocol
Cite this protocol
Dieckmann, R., Couté, Y., Hochstrasser, D., Diaz, JJ., Sanchez, JC. (2005). Purification of Nucleoli From Lymphoma Cells and Solubilization of Nucleolar Proteins for 2-DE Separation. In: Walker, J.M. (eds) The Proteomics Protocols Handbook. Springer Protocols Handbooks. Humana Press. https://doi.org/10.1385/1-59259-890-0:079
Download citation
DOI: https://doi.org/10.1385/1-59259-890-0:079
Publisher Name: Humana Press
Print ISBN: 978-1-58829-343-5
Online ISBN: 978-1-59259-890-8
eBook Packages: Springer Protocols