Abstract
The yeast DEL assay is a simple, rapid method for measuring the frequency of reversion of a disrupted his3 gene by homologous intrachromosomal recombination. Reversion to histidine prototrophy results in deletion (DEL) of the disrupting sequence. The DEL assay has been used to study the effects of various DNA-damaging treatments on the frequency of deletion-recombination and has been shown to have a high level of sensitivity and specificity toward carcinogens, many of which are poorly detected by bacterial mutagenicity and other short-term genotoxicity assays. The DEL assay therefore is a useful addition to the arsenal of predictive tests for genotoxicity and carcinogenicity. This chapter provides an in-depth description of materials and methods for the yeast DEL assay from a user’s prospective and should allow the assay to be successfully deployed in any laboratory with basic microbiological capability and minimal user training.
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Sandberg, A. A. (1991) Chromosome abnormalities in human cancer and leukemia. Mutat. Res. 247, 231–240.
Tlsty, T. D., Briot, A., Gualberto, A., et al. (1995) Genomic instability and cancer. Mutat. Res. 337, 1–7.
Bishop, A. J. and Schiestl, R. H. (2002) Homologous recombination and its role in carcinogenesis. J. Biomed. Biotechnol. 2, 75–85.
Bishop, J. M. (1987) The molecular genetics of cancer. Science 235, 305–311.
Hollstein, M., Sidransky, D., Vogelstein, B., and Harris, C. C. (1991) p53 mutations in human cancers. Science 253, 49–53.
Malkin, D., Li, F. P., Strong, L. C., et al. (1990) Germ line p53 mutations in a familial syndrome of breast cancer, sarcomas, and other neoplasms. Science 250, 1233–1238.
Vogelstein, B. (1990) Cancer. A deadly inheritance. Nature 348, 681–682.
Meyn, M. S. (1993) High spontaneous intrachromosomal recombination rates in ataxia-telangiectasia. Science 260, 1327–1330.
Livingstone, L. R., White, A., Sprouse, J., Livanos, E., Jacks, T., and Tlsty, T. D. (1992) Altered cell cycle arrest and gene amplification potential accompany loss of wild-type p53. Cell 70, 923–935.
German, J. (1993) Bloom syndrome: a mendelian prototype of somatic mutational disease. Medicine (Baltimore) 72, 396–406.
Fukuchi, K., Martin, G. M., and Monnat, R. J., Jr. (1989) Mutator phenotype of Werner syndrome is characterized by extensive deletions. Proc. Natl. Acad. Sci. USA 86, 5893–5897.
Ellis, N. A. (1996) Mutation-causing mutations. Nature 381, 110–111.
Schiestl, R. H., Gietz, R. D., Mehta, R. D., and Hastings, P. J. (1989) Carcinogens induce intrachromosomal recombination in yeast. Carcinogenesis 10, 1445–1455.
Aubrecht, J., Rugo, R., and Schiestl, R. H. (1995) Carcinogens induce intrachromosomal recombination in human cells. Carcinogenesis 16, 2841–2846.
Schiestl, R. H., Aubrecht, J., Khogali, F., and Carls, N. (1997) Carcinogens induce reversion of the mouse pink-eyed unstable mutation. Proc. Natl. Acad. Sci. USA 94, 4576–4581.
Zhang, L. H. and Jenssen, D. (1994) Studies on intrachromosomal recombination in SP5/V79 Chinese hamster cells upon exposure to different agents related to carcinogenesis. Carcinogenesis 15, 2303–2310.
Lebel, E. G., Masson, J., Bogucki, A., and Paszkowski, J. (1993) Stress-induced intrachromosomal recombination in plant somatic cells. Proc. Natl. Acad. Sci. USA 90, 422–426.
Kovalchuk, O., Titov, V., Hohn, B., and Kovalchuk, I. (2001) A sensitive transgenic plant system to detect toxic inorganic compounds in the environment. Nat. Biotechnol. 19, 568–572.
Brennan, R. J., Swoboda, B. E., and Schiestl, R. H. (1994) Oxidative mutagens induce intrachromosomal recombination in yeast. Mutat. Res. 308, 159–167.
Schiestl, R. H. (1989) Nonmutagenic carcinogens induce intrachromosomal recombination in yeast. Nature 337, 285–288.
Davidson, J. F., Whyte, B., Bissinger, P. H., and Schiestl, R. H. (1996) Oxidative stress is involved in heat-induced cell death in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 93, 5116–5121.
Galli, A. and Schiestl, R. H. (1998) Effects of DNA double-strand and single-strand breaks on intrachromosomal recombination events in cell-cycle-arrested yeast cells. Genetics 149, 1235–1250.
Carls, N. and Schiestl, R. H. (1994) Evaluation of the yeast DEL assay with 10 compounds selected by the International Program on Chemical Safety for the evaluation of short-term tests for carcinogens. Mutat. Res. 320, 293–303.
Brennan, R. J. and Schiestl, R. H. (1999) The aromatic amine carcinogens o-toluidine and o-anisidine induce free radicals and intrachromosomal recombination in Saccharomyces cerevisiae. Mutat. Res. 430, 37–45.
Ashby, J. and Tennant, R. W. (1991) Definitive relationships among chemical structure, carcinogenicity and mutagenicity for 301 chemicals tested by the U.S. NTP. Mutat. Res. 257, 229–306.
Ashby, J., Draper, M., Matter, B. E., et al., eds. (1985) Evaluation of Short Term Tests for Carcinogens. Progress in Mutation Research, vol. 5, Elsevier, New York.
Brennan, R. J. and Schiestl, R. H. (1998) Chloroform and carbon tetrachloride induce intrachromosomal recombination and oxidative free radicals in Saccharomyces cerevisiae. Mutat. Res. 397, 271–278.
Brennan, R. J. and Schiestl, R. H. (1997) Diaminotoluenes induce intrachromosomal recombination and free radicals in Saccharomyces cerevisiae. Mutat. Res. 381, 251–258.
Brennan, R. J., Kandikonda, S., Khrimian, A. P., DeMilo, A. B., Liquido, N. J., and Schiestl, R. H. (1996) Saturated and monofluoro analogs of the oriental fruit fly attractant methyl eugenol show reduced genotoxic activities in yeast. Mutat. Res. 369, 175–181.
Aubrecht, J., Narla, R. K., Ghosh, P., Stanek, J., and Uckun, F. M. (1999) Molecular genotoxicity profiles of apoptosis-inducing vanadocene complexes. Toxicol. Appl. Pharmacol. 154, 228–235.
Schiestl, R. H. and Prakash, S. (1990) RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination. Mol. Cell. Biol. 10, 2485–2491.
Schiestl, R. H., Igarashi, S., and Hastings, P. J. (1988) Analysis of the mechanism for reversion of a disrupted gene. Genetics 119, 237–247.
Schiestl, R. H. and Prakash, S. (1988) RAD1, an excision repair gene of Saccharomyces cerevisiae, is also involved in recombination. Mol. Cell. Biol. 8, 3619–3626.
Brennan, R. J. and Schiestl, R. H. (2001) Persistent genomic instability in the yeast Saccharomyces cerevisiae induced by ionizing radiation and DNA-damaging agents. Radiat. Res. 155, 768–777.
Ames, B. N., McCann, J., and Yamasaki, E. (1975) Methods for detecting carcinogens and mutagens with the Salmonella/mammalian-microsome mutagenicity test. Mutat. Res. 31, 347–364.
Burke, D., Dawson, D., and Stearns, T. (2000) Methods in Yeast Genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
Ugolini, S. and Bruschi, C. V. (1996) The red/white colony color assay in the yeast Saccharomyces cerevisiae: epistatic growth advantage of white ade8-18, ade2 cells over red ade2 cells. Curr. Genet. 30, 485–492.
McCann, J., Choi, E., Yamasaki, E., and Ames, B. N. (1975) Detection of carcinogens as mutagens in the Salmonella/microsome test: assay of 300 chemicals. Proc. Natl. Acad. Sci. USA 72, 5135–5139.
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Brennan, R.J., Schiestl, R.H. (2004). Detecting Carcinogens With the Yeast DEL Assay. In: Waldman, A.S. (eds) Genetic Recombination. Methods in Molecular Biology™, vol 262. Humana Press. https://doi.org/10.1385/1-59259-761-0:111
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DOI: https://doi.org/10.1385/1-59259-761-0:111
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Print ISBN: 978-1-58829-236-0
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