Skip to main content

A One-Filter–Three-Probe Assay for Defective Interference (DI) Effects of Naturally Occurring Core Internal Deletion (CID) Variants of Human Hepatitis B Virus

  • Protocol
Book cover Hepatitis B and D Protocols

Part of the book series: Methods in Molecular Medicine ((MIMM,volume 95))

  • 537 Accesses

Abstract

“Incomplete particles” were discovered during successive undiluted passages of the influenza viruses (1). In general, these incomplete particles contain a less than full-length genome and are replication-defective. They can be rescued by, and interfere with, the replication of homologous helper viruses. Another important characteristic of incomplete particles is their ability to enrich their proportion in the total viral yield in cells infected with wild-type and incomplete viruses (24). Based on these properties, Huang and Baltimore defined these biologically active incomplete particles as defective interfering (DI) particles and the replication-competent homologous helper viruses as standard viruses (5).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. von Magnus, P. (1947) Studies on interference in experimental influenza. I. biological observations. Ark. Kemi. Mineral. Geol. 24, 1.

    Google Scholar 

  2. Dimmock, N.J. (1996) Antiviral activity of defective interfering influenza virus in vivo. In: Myint, S., and Taylor-Robinson, D. (eds.), Viral and Other Infections of the Human Respiratory Tract, pp. 421–445.

    Google Scholar 

  3. Holland J. J. (1987) Defective interfering rhabdoviruses. In: Wagner, R. (ed), The Rhabdoviruses, Plenum Publishing, New York, p. 297.

    Google Scholar 

  4. Roux, L., Simon, A. E., and Holland J. J. (1991) Effects of defective interfering viruses on viral replication and pathogenesis in vitro and in vivo. Adv. Virus Res. 40, 181–211.

    Article  PubMed  CAS  Google Scholar 

  5. Huang, A. S., and Baltimore, D. (1970) Defective viral particles and viral disease processes. Nature 226, 325–327.

    Article  PubMed  CAS  Google Scholar 

  6. Doyle, M., and Holland, J. J. (1973) Prophylaxis and immunization in mice by use of virus-free defective T particles to protect against intracerebral infection by vesicular stomatitis virus. Proc. Natl. Acad. Sci. USA 70, 2105–2108.

    Article  PubMed  CAS  Google Scholar 

  7. Spandidos, D. A., and Graham, A. F. (1976) Generation of defective virus after infection of newborn rats with reovirus. J. Virol. 20, 234–247.

    PubMed  CAS  Google Scholar 

  8. Hillman, B. I., Carrington, J. C., and Morris, T. J. (1987) A defective interfering RNA that contains a mosaic of a plant virus genome. Cell 51, 427–433.

    Article  PubMed  CAS  Google Scholar 

  9. Shih, C., Tai, P-C, Whitehead, W., Hosono, S., Lee, C.-S. and Yang, C.-S. (1996) Hepatitis B and C viruses and liver cancer. In: Bertino, J.R. (eds), Encyclopedia of Cancer. Academic Press, New York, pp. 824–834.

    Google Scholar 

  10. Tiollais, P., Pourcel, C., and Dejean, A. (1985) The hepatitis B virus. Nature 317, 489–495.

    Article  PubMed  CAS  Google Scholar 

  11. Chisari, F. V., and C. Ferrari. (1995) Hepatitis B virus immunopathogenesis. Annu. Rev. Immunol. 13, 29–60.

    Article  PubMed  CAS  Google Scholar 

  12. Milich, D. R. (1991) Immune response to hepatitis B virus proteins: relevance of the murine model. Semin. Liver Dis. 11, 93–112.

    Article  PubMed  CAS  Google Scholar 

  13. Ferrari, C., Bertoletti, A., Pena, A., et al. (1991) Identification of immunodominant T cell epitopes of the hepatitis B virus nucleocapsid antigen. J. Clin. Invest. 88, 214–222.

    Article  PubMed  CAS  Google Scholar 

  14. Mondelli, M., Vergani, G. M., Alberti, A., et al. (1982) Specificity of T lymphocyte cytotoxicity to autologous hepatocytes in chronic hepatitis B virus infection: evidence that T cells are directed against HBV core antigen expressed on hepatocytes. J. of Immunol. 129, 2773–2778.

    CAS  Google Scholar 

  15. Tsai, S. L., Chen, P. J., Lai, M. Y., et al. (1992) Acute exacerbations of chronic type B hepatitis are accompanied by increased T cell responses to hepatitis B core and e antigens. J. Clin. Invest. 89, 87–96.

    Article  PubMed  CAS  Google Scholar 

  16. Ackrill, A. M., Naoumov, N. V., Eddleston, A.L.W.F., and Williams, R. (1993) Specific deletions in the hepatitis B virus core open reading frame in patients with chronic active hepatitis B. J. Med. Virol. 41, 165–169.

    Article  PubMed  CAS  Google Scholar 

  17. Hosono, S., Tai, P.-C., Wang, W., et al. (1995) Core antigen mutations of human hepatitis B virus in hepatomas accumulate in MHC class II-restricted T cell epitopes. Virology 212, 151–162.

    Article  PubMed  CAS  Google Scholar 

  18. Okamoto, H., Tsuda, F., and Mayumi, M. (1987) Defective mutants of hepatitis B virus in the circulation of symptom-free carriers. Jpn. J. Exp. Med. 57, 217–221.

    PubMed  CAS  Google Scholar 

  19. Wakita, T., Kakumu, S., Shibata, M., et al. (1991) Detection of pre-C and core region mutants of hepatitis B virus in chronic hepatitis B virus carriers. J. Clin. Invest. 88, 1793–1801.

    Article  PubMed  CAS  Google Scholar 

  20. Sahu, G. K., Tai P. C., Banerjee S., et al. (2002) Out-of-frame vs. in-frame core internal deletion (CID) variants of human and woodchuck hepatitis B viruses. Virology 292, 35–43.

    Article  PubMed  CAS  Google Scholar 

  21. Aye, T. T., Uchida, T., Becker, S. O., et al. (1994) Variations of hepatitis B virus precore/core gene sequence in acute and fulminant hepatitis B. Dig. Dis. Sci. 39, 1281–1287.

    Article  PubMed  CAS  Google Scholar 

  22. Ehata, T., Omata, M., Chuang, W-L., et al. (1993) Mutations in core nucleotide sequence of hepatitis B virus correlate with fulminant and severe hepatitis. J. Clin. Invest. 91, 1206–1213.

    Article  PubMed  CAS  Google Scholar 

  23. Jung, M. C., Diepolder, H. M., Spengler, U., et al. (1995) Activation of a heterologous hepatitis B (HB) core and e antigen-specific CD4+ T-cell population during seroconversion to anti-HBe and anti-HBs in hepatitis B virus infection. J. Virol. 69, 3358–3368.

    PubMed  CAS  Google Scholar 

  24. Menne, S., Maschke, J., Tolle, T. K., Lu, M., and Roggendorf, M. (1997) Characterization of T cell response to woodchuck hepatitis core protein and protection of woodchucks from infection by immunization with peptides containing a T cell epitope. J. Virol. 71, 65–74.

    PubMed  CAS  Google Scholar 

  25. Milich, D.R., McLachlan, A., Moriarty, A., and Thornton, G. B. (1987) Immune response to hepatitis B virus core antigen (HBcAg): localization of T cell recognition sites within HBcAg/HBeAg. J. Immunol. 139, 1223–1231.

    PubMed  CAS  Google Scholar 

  26. Tsai, S. L., Chen, M. H., Yeh, C. T., et al. (1996) Purification and characterization of a naturally processed hepatitis B virus peptide recognized by CD8+ cytotoxic T lymphocytes. J. Clin. Invest. 97, 577–584.

    Article  PubMed  CAS  Google Scholar 

  27. Gripon, P., Diot, C., and Guguen-Guillouzo, C. (1993) Reproducible high level infection of cultured adult human hepatocytes by hepatitis B virus: effect of polyethylene glycol on adsorption and penetration. Virology 192, 534–540.

    Article  PubMed  CAS  Google Scholar 

  28. Crick, J., Cartwright, B., and Brown, F. (1966) Interfering components of vesicular stomatitis virus. Nature 211, 1204–1205.

    Article  PubMed  CAS  Google Scholar 

  29. Hackett, A. J., Schaffer, F. L., and Madin, S. H. (1967) The separation of infectious and autointerfering particles in vesicular stomatitis virus preparations. Virology 31, 114–119.

    Article  PubMed  CAS  Google Scholar 

  30. Huang, A. S., Greenwalt, J. W., and Wagner, R. R. (1966) Defective T particles of vesicular stomatitis virus. I. preparation, morphology, and some biologic properties. Virology 30, 161–172.

    Article  PubMed  CAS  Google Scholar 

  31. Barrett, A. D. T. and Dimmock, N. J. (1986) Defective interfering viruses and infections of animals. Curr. Top. Microbiol. Immunol. 128, 55–84.

    PubMed  CAS  Google Scholar 

  32. Yuan, T.-T., Lin, M. H., Chen, D. S., and Shih, C. (1998) A defective interference-like phenomenon of human hepatitis B virus in chronic carriers. J. Virol. 72, 578–584.

    PubMed  CAS  Google Scholar 

  33. Yuan, T.-T., Lin, M. H., Qiu, S. M., and Shih, C. (1998) Functional characterization of naturally-occurring variants of human hepatitis B virus containing the core internal deletion mutation. J. Virol. 72, 2168–2176.

    PubMed  CAS  Google Scholar 

  34. Bean, W. J., Kawaoka, Y., Wood, J. M., Pearson, J.E., and Webster, R.G. (1985) Characterization of virulent and avirulent A/chicken/Pennsylvania/83 influenza A viruses: potential role of defective interfering RNAs in nature. J. Virol. 54, 151–160.

    PubMed  CAS  Google Scholar 

  35. Pedley, S., Hundley, F., Chrystie, I., McCrae, M. A., and Desselberger, U. (1984) The genomes of rotaviruses isolated from chronically infected immunodeficient children. J. Gen. Virol. 65, 1141–1150.

    Article  PubMed  CAS  Google Scholar 

  36. Siegl, G., Nuesch, J. P. F., and Chastonay, J. de. (1990) Defective interfering particles of hepatitis A virus in cell cultures and clinical specimens. In: Brinton, M. A. and Heinz, F. X. (ed.), New Aspects of Positive-Strand RNA Viruses. American Society of Microbiology, Washington DC, pp. 102–107.

    Google Scholar 

  37. Summers, J. and Mason, W.S. (1982) Replication of the genome of a hepatitis B-like virus by reverse transcription of an RNA intermediate. Cell 29, 403–415.

    Article  PubMed  CAS  Google Scholar 

  38. Shih, C., Li, L.S., Roychoudhury, S., and Ho, M.H. (1989) In vitro propagation of human hepatitis B virus in a rat hepatoma cell line. Proc. Natl. Acad. Sci. USA 86, 6223–6327.

    Article  Google Scholar 

  39. Marinos, G., Torre, F., Gunther, S., et al. (1996) Hepatitis B virus variants with core gene deletions in the evolution of chronic hepatitis B infection. Gastroenterology 111, 183–192.

    Article  PubMed  CAS  Google Scholar 

  40. Akarca, U. S. and Lok, A. S. F. (1995) Naturally occurring core-gene-defective hepatitis B viruses. J. Gen. Virol. 76, 1821–1826.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2004 Humana Press Inc.

About this protocol

Cite this protocol

Shih, C., Yuan, TT.T. (2004). A One-Filter–Three-Probe Assay for Defective Interference (DI) Effects of Naturally Occurring Core Internal Deletion (CID) Variants of Human Hepatitis B Virus. In: Hamatake, R.K., Lau, J.Y.N. (eds) Hepatitis B and D Protocols. Methods in Molecular Medicine, vol 95. Humana Press. https://doi.org/10.1385/1-59259-669-X:151

Download citation

  • DOI: https://doi.org/10.1385/1-59259-669-X:151

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-105-9

  • Online ISBN: 978-1-59259-669-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics