Skip to main content

2-D Databases on the World Wide Web

  • Protocol
2-D Proteome Analysis Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 112))

Abstract

Many laboratories have identified proteins on two-dimensional (2-D) maps, and have built a master gel and a related 2-D database containing data specific to the identified proteins. Several of these databases have been made available on the World Wide Web (WWW) (1), and many more will undoubtedly follow. This chapter shows how to retrieve data remotely from these databases over the Internet.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Berners-Lee, T. J., Cailliau, R., Groff, J. F., and Pollermann, B. (1992) World-Wide Web: The Information Universe. Electronic Networking: Res., Applications and Policy 2, 52–58.

    Article  Google Scholar 

  2. The Melanie II 2-DE analysis software WWW page: http://www.expasy.ch/melanie/melanie-top.html.

  3. Wilkins, M. R., Sanchez, J. C, Bairoch, A., Hochstrasser, D. F., and Appel, R. D. (1996) Proteome Projects: integrating two-dimensional gel databases using the Melanie II software. Trends Biochem. Sci. 21, 12, 496–497.

    Article  Google Scholar 

  4. Appel R. D. (1997) Interfacing and integrating databases, in: Proteome Research: New Frontiers in Functional Genomics (Wilkins, M. R., Williams, K. L., Appel, R. D., and Hochstrasser, D. F., eds.), Springer Verlag, Berlin, Heidelberg.

    Google Scholar 

  5. Appel, R. D., Bairoch, A., and Hochstrasser, D. F. (1994) A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. Trends Biochem. Sci. 6, 258–260.

    Article  Google Scholar 

  6. The ExPASy molecular biology World-Wide Web server: http://www.expasy.ch/.

  7. The SWISS-2DPAGE 2-DE database: http://www.expasy.ch/ch2d/ch2d-top.html.

  8. Sanchez, J.-C, Appel, R. D., Golaz, O., Pasquali, C, Ravier, F., and Bairoch, A. (1995) Inside SWISS-2DPAGE database. Electrophoresis 16, 1131–1151.

    Article  PubMed  CAS  Google Scholar 

  9. Bairoch, A. and Apweiler, R. (1996) The SWISS-PROT protein sequence data bank and its new supplement TrEMBL. Nucleic Acids Res. 24, 21–25.

    Article  PubMed  CAS  Google Scholar 

  10. Bjellqvist, B., Hughes, G. J., Pasquali, C, Paquet, N., Ravier, F., Sanchez, J.-C, et al. (1993) The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis 14, 1023–1031.

    Article  PubMed  CAS  Google Scholar 

  11. Bjellqvist, B., Basse, B., Olsen, E., and Celis, J. E. (1994) Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions. Electrophoresis 15, 529–539.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1999 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Appel, R.D., Bairoch, A., Hochstrasser, D.F. (1999). 2-D Databases on the World Wide Web. In: Link, A.J. (eds) 2-D Proteome Analysis Protocols. Methods in Molecular Biology, vol 112. Humana Press. https://doi.org/10.1385/1-59259-584-7:383

Download citation

  • DOI: https://doi.org/10.1385/1-59259-584-7:383

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-524-9

  • Online ISBN: 978-1-59259-584-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics