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Virus-Induced Gene Silencing

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Plant Functional Genomics

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 236))

Abstract

In the postgenomic era, large-scale functional genomic approaches are necessary for converting sequence information into functional information. A para-genetic approach, called virus-induced gene silencing (VIGS), offers a rapid means of gaining insight into gene function in plants. VIGS system could be used to suppress endogenous gene expression by infecting plants with a recombinant virus vector (VIGS vector) carrying host-derived sequence. Here, we describe the use of tobacco rattle virus (TRV)-based VIGS technique to study gene function in Nicotiana benthamiana and tomato.

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References

  1. Waterhouse, P. M., Wang, M. B., and Lough, T. (2001) Gene silencing as an adaptive defense against viruses. Nature 411, 834–842.

    Article  PubMed  CAS  Google Scholar 

  2. Baulcombe, D. C. (1999) Fast forward genetics based on virus-induced gene silencing. Curr. Opin. Plant Biol. 2, 109–113.

    Article  PubMed  CAS  Google Scholar 

  3. Kumagai, M. H., Donson, J., della-Cioppa, G., Harvey, D., Hanley, K., and Grill, L. K. (1995) Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA. Proc. Natl. Acad. Sci. USA 92, 1679–1683.

    Article  PubMed  CAS  Google Scholar 

  4. Ruiz, M. T., Voinnet, O., and Baulcombe, D. C. (1998) Initiation and maintenance of virus induced gene silencing. Plant Cell 10, 937–946.

    Article  PubMed  CAS  Google Scholar 

  5. Peele, C., Jordan, C. V., Muangsan, N., et al. (2001) Silencing of a meristematic gene using geminivirus-derived vectors. Plant J. 27, 357–366.

    Article  PubMed  CAS  Google Scholar 

  6. Ratcliff, F., Martin-Hernandez, A. M., and Baulcombe, D. C. (2001) Technical advance. Tobacco rattle virus as a vector for analysis of gene function by silencing. Plant J. 25, 237–245.

    Article  PubMed  CAS  Google Scholar 

  7. Liu, Y., Schiff, M., Marathe, R., and Dinesh-Kumar, S. P. (2002) Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N-mediated resistance to tobacco mosaic virus. Plant J. 30, 415–429.

    Article  PubMed  CAS  Google Scholar 

  8. Liu, Y., Schiff, M., and Dinesh-Kumar, S. P. (2002) Virus induced gene silencing in tomato. Plant J. 31, 777–786.

    Article  PubMed  CAS  Google Scholar 

  9. MacFarlane, S. A. (1999) Molecular biology of the tobraviruses. J. Gen. Virol. 80, 2799–2807.

    PubMed  CAS  Google Scholar 

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© 2003 Humana Press Inc., Totowa, NJ

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Dinesh-Kumar, S.P., Anandalakshmi, R., Marathe, R., Schiff, M., Liu, Y. (2003). Virus-Induced Gene Silencing. In: Grotewold, E. (eds) Plant Functional Genomics. Methods in Molecular Biology™, vol 236. Humana Press. https://doi.org/10.1385/1-59259-413-1:287

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  • DOI: https://doi.org/10.1385/1-59259-413-1:287

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-145-5

  • Online ISBN: 978-1-59259-413-9

  • eBook Packages: Springer Protocols

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