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PCR

Principles, Procedures, and Parameters

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PCR Mutation Detection Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 187))

Abstract

In 1983, the Cetus scientist Kary Mullis developed an ingenious “in vitro” nucleic acid amplification technique termed the polymerase chain reaction (PCR). This technique involves the use of a pair of short (usually 20 bp long) pieces of synthesized DNA called primers and a thermostable DNA polymerase to achieve near-exponential enzymatic amplification of target DNA. Because of the sensitivity of this technique, DNA of relatively poor condition may be amplified, as only short intact sequences are required. Therefore, it is not always necessary to carry out lengthy template sample preparation. For example, a simple boiling step is often enough to release DNA from blood samples (1). The starting material for PCR may be DNA from a variety of sources such as blood, tissues, paraffin-embedded material, ancient archaeological samples, or forensic material. The PCR may also be used to amplify RNA, which must first be converted into cDNA by the enzyme reverse transcriptase (RT-PCR). In contrast to DNA, great care must be taken in the preparation and handling of RNA because of its instability and susceptibility to degradation.

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References

  1. Rapley, R. (1998) Polymerase chain reaction, in Molecular Biomethods Handbook (Rapley, R. and Walker, J. M., ed.), Humana, Totowa, NJ, pp. 305–325.

    Chapter  Google Scholar 

  2. Cooper, D. N. and Krawczak, M., ed. (1993) Human Gene Mutation, BIOS Scientific, Oxford.

    Google Scholar 

  3. Henegariu, O., Heerema, N. A., Dlouhy, S. R., Vance, G. H., and Vogt, P. H. (1997) Multiplex PCR: critical parameters and step-by-step protocol. Biotechniques 23, 504–511.

    PubMed  CAS  Google Scholar 

  4. Hecimovic, S., Barisic, I., Muller, A., Petkovic, I., Baric, I., Ligutic, I., et al. (1997) Expand Long PCR for Fragile X mutation detection. Clin. Genet. 52, 147–154.

    Article  PubMed  CAS  Google Scholar 

  5. Thiel, V., Rashtchian, A., Herold, J., Schuster, D. M., Guan, N., and Siddell, S.G. (1997) Effective amplification of 20-kb DNA by reverse transcription PCR. Anal. Biochem. 252, 62–70.

    Article  PubMed  CAS  Google Scholar 

  6. Poort, S. R., Bertina, R. M., and Vos, H. L. (1997) Rapid detection of the prothrombin 20210A variation by allele specific PCR. Thromb. and Haemost. 78, 1157–1163.

    CAS  Google Scholar 

  7. Flesch, B. K., Bauer, F., and Neppert, J. (1998) Rapid typing of the human Fcyreceptor IIA polymorphism by polymerase chain reaction amplification with allele-specific primers. Transfusion 38, 174–176.

    Article  PubMed  CAS  Google Scholar 

  8. Dzik, S. (1998) The power of primers. Transfusion 38, 118–121.

    Article  PubMed  CAS  Google Scholar 

  9. Hengen, P. N. (1997) Optimizing multiplex and LA-PCR with betaine. Trends Biomed. Sci. 22, 225–226.

    Article  CAS  Google Scholar 

  10. Henke, W., Herdel, K., Jung, K., Schnorr, D., and Loening, S. A. (1997) Betaine improves the PCR amplification of GC-rich DNA sequences. Nucl. Acids Res. 25(19), 3957–3958.

    Article  PubMed  CAS  Google Scholar 

  11. Bauer, P., Rolfs, A., Regitz-Zagrosek, V., Hildebrandt, A., and Fleck, E. (1997) Use of manganese in RT-PCR eliminates PCR artifacts resulting from Dnase I digestion 2. Biotechniques 2, 1128–1132.

    Google Scholar 

  12. Maudru, T. and Peden, K. (1997) Elimination of background signals in a modified polymerase chain reaction-based reverse transcriptase assay. J. Virol. Meth. 66, 247–261.

    Article  CAS  Google Scholar 

  13. Tang, Y., Procop, G. W., and Persing, D. H. (1997) Molecular diagnostics of infectious diseases. Clin. Chem. 43(11), 2021–2038.

    PubMed  CAS  Google Scholar 

  14. Vaneechoutte, M. and Van Eldere, J. (1997) The possibilities and limitations of nucleic acid amplification technology in diagnostic microbiology. J. Med. Microbiol. 46, 188–194.

    Article  PubMed  CAS  Google Scholar 

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© 2002 Humana Press Inc., Totowa, NJ

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Jones, N.L. (2002). PCR. In: Theophilus, B.D.M., Rapley, R. (eds) PCR Mutation Detection Protocols. Methods in Molecular Biology, vol 187. Humana Press. https://doi.org/10.1385/1-59259-273-2:037

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  • DOI: https://doi.org/10.1385/1-59259-273-2:037

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-617-8

  • Online ISBN: 978-1-59259-273-9

  • eBook Packages: Springer Protocols

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