Abstract
The CCR5 gene encodes a cell-surface chemokine receptor molecule, which serves as a coreceptor for macrophage-tropic strains of HIV-1 (1–3). Mutations in this gene may alter expression or function of the protein product, thereby altering chemokine binding or HIV-1 infection of cells on which the receptor is normally expressed. Indeed, it was recently shown that individuals homozygous for a mutant allele (CCR5-△32) characterized by a 32-bp deletion in the coding region of the CCR5 gene, are relatively resistant to HIV-1 infection (4–6). This allele causes a frame shift at amino acid 185, and homozygous individuals fail to express detectable cell-surface CCR5 molecules. It is possible that other as-yet unidentified variants play a role in HIV-1 infectivity and outcome. Several additional mutations, most of which are single-base substitutions, have been identified in the coding region of the CCR5 gene using the single-strand conformation polymorphism (SSCP) technique (7).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Alkhatib, G., Combadiere, C., Broder, C. C., Feng, Y., Kennedy, P. E., Murphy, P. M., and Berger, E. A. (1996) CC CKR5: A RANTES, MIP-1a, MIP-1b receptor as a fusion cofactor for macrophage-tropic HIV-1. Science 272, 1955–1962.
Deng, H., Liu, R., Ellmeier, W., Choe, S., Unutmaz, D., Burkhart, M., Di Marzio, P., Marmon, A., Sutton, R., and Hill, C. M. (1996) Identification of a major co-receptor for primary isolates of HIV-1. Nature 381, 661–666.
Dragic, T., Litwin, V., Allaway, G. P., Martin, S. R., Huang, Y., Nagashima, K. A., Cayanan, C., Maddon, P. J., Koup, R. A., Moore, J. P., and Paxton, W. A. (1996) HIV-1 entry into CD4+ cells is mediated by the chemokine receptor CC-CKR5. Nature 381, 667–673.
Dean, M., Carrington, M., Winkler, C., Huttley, G. A., Smith, M. W., Allikmets, R., Goedert, J. J., Buchbinder, S.P., Vittinghoff, E., Gomperts, E., et al. (1996) Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Science 273, 1856–1862.
Samson, M., Libert, F., Doranz, B. J., Rucker, J., Liesnard, C, Farber, C.-M., Saragosti, S., Lapouméroulie, C., Cognaux, J., Forceille, C, et al. (1996) Resistance to HIV-1 infection in Caucasian individuals bearing mutant alleles of the CCR-5 chemokine receptor gene. Nature 382, 722–725.
Liu, R., Paxton, W. A., Choe, S., Ceradini, D., Martin, S. R., Horuk, R., MacDonald, M., Stuhlmann, H., Koup, R. A., and Landau, N. R. (1996) Homozygous defect in HIV-1 coreceptor accounts for resistance of some multiply-exposed individuals to HIV-1 infection. Cell 86, 367–377.
Carrington, M., Kissner, T., Gerard, B., Ivanov, S., O’Brien, S. J., and Dean, M. (1997) Novel alleles of the chemokine receptor gene CCR5. Am.J.Hum. Genet. 61,1261–1267.
Orita, M., Suzuki, Y., Sekiya, T., and Hayashi, K. (1989) Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5, 874–879.
Glavac, D. and Dean, M. (1993) Optimization of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations. Hum. Mutation 2,404–414.
Dean, M., White, M. B., Amos, J., Gerrard, B., Stewart, C., Khaw, K., and Leppert, M. (1990) Multiple mutations in highly conserved residues are found in mildly affected cystic fibrosis patients. Cell 61, 863–870.
Ravnik-Glavac, M., Glavac, D., and Dean, M. (1994) Sensitivity of single-strand conformation polymorphism and heteroduplex method for mutation detection in the cystic fibrosis gene. Hum Mol Genet 3, 801–807.
Mashiyama, S., Murakami, Y., Yoshimoto, T., and Sekiya, T. (1991) Detection of p53 gene mutations in human brain tumors by single-strand conformation polymorphism analysis of polymerase chain reaction products. Oncogene 6, 1313–1318.
Carrington, M., Miller, T., White, M., Gerrard, B., Stewart, C., Dean, M., and Mann, D. (1992) Typing of HLA-DQA1 and DQB1 using DNA single-strand conformation polymorphism. Hum Immunol 33, 208–212.
Hayashi, K. (1991) PCR-SSCP: a simple and sensitive method for detection of mutations in the genomic DNA. PCR Methods Appl 1, 34–38.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1999 Humana Press Inc., Totowa, NJ
About this protocol
Cite this protocol
Martin, M.P., Carrington, M. (1999). Detection of Polymorphisms in the HIV-1 Coreceptor CCR5 Using Single-Strand Conformation Polymorphism. In: Michael, N.L., Kim, J.H. (eds) HIV Protocols. Methods in Molecular Medicine™, vol 17. Humana Press. https://doi.org/10.1385/0-89603-369-4:205
Download citation
DOI: https://doi.org/10.1385/0-89603-369-4:205
Publisher Name: Humana Press
Print ISBN: 978-0-89603-369-6
Online ISBN: 978-1-59259-601-0
eBook Packages: Springer Protocols