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GCG: Comparison of Sequences

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 24))

Abstract

Comparison of sequences can be done in various ways. Biological sequences differ in length and composition. Whereas simple identity is relatively easy to compute, “similarity” must be defined before a computer can start its calculation. A simple identity matrix for DNA sequences is shown in Table 1.

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Reference

  1. Devereux, J, Haeberli, P., and Smithies, O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucl. Acids Rex 12, 387–395.

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© 1994 Humana Press Inc., Totowa, NJ

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Dölz, R. (1994). GCG: Comparison of Sequences. In: Griffin, A.M., Griffin, H.G. (eds) Computer Analysis of Sequence Data. Methods in Molecular Biology, vol 24. Humana Press. https://doi.org/10.1385/0-89603-246-9:65

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  • DOI: https://doi.org/10.1385/0-89603-246-9:65

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-246-0

  • Online ISBN: 978-1-59259-511-2

  • eBook Packages: Springer Protocols

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