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Detection of Gene Deletions Using Multiplex Polymerase Chain Reactions

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Protocols in Human Molecular Genetics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 9))

Abstract

The polymerase chain reaction (PCR) is a rapid method for the amplification and analysis of DNA sequences, and has greatly simplified the identification of mutations leading to genetic diseases (13). The exquisite sensitivity of this method can also be exploited to demonstrate the presence or absence of specific DNA sequences in a sample. This aspect of the procedure has led to the development of assays that can eliminate the need for Southern analysis when screening for DNA deletions that lead to genetic disease. Deletions account for a high frequency of the mutations that have been observed to cause a number of genetic diseases, such as Duchenne/Becker muscular dystrophy (DMD) (4), Lesch-Nyhan syndrome (5), and X-linked ichthyosis (6).

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References

  1. Erhch, H. A (ed) (1989) PCR Technology Principles and Applications of DNA Amplification. Stockton, New York

    Google Scholar 

  2. Gibbs, R A. and Chamberlain, J S (1989) The polymerase chain reaction A meeting report Genes Dev 3, 1095–1098

    Google Scholar 

  3. Erlich, H. A., Gibbs, R A., and Kazazian, H. H., Jr. (eds.) (1989) The Polymerase Cham Reaction: Current Communications m Molecular Biology. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY

    Google Scholar 

  4. Chamberlain, J. S. and Caskey, C. T. (1990) Duchenne muscular dystrophy, in Current Neurology, vol. 10, Chapter 2. Yearbook Medical, Chicago, IL

    Google Scholar 

  5. Stout, J T. and Caskey, C. T (1985) HPRT: Gene structure, expression and mutation. Annu. Rev. Genet. 19, 127–148.

    Article  PubMed  CAS  Google Scholar 

  6. Ballabio, A., Ranier, J E., Chamberlain, J. S., Zollo, M., and Caskey, C. T (1990) Screening for steroid sulfatase (STS) gene deletions via multiplex DNA amplification Hum Genet. 84, 571–573.

    Article  PubMed  CAS  Google Scholar 

  7. Chamberlain, J. S, Gibbs, R A, Ranier J. E., Nguyen, P. N., and Caskey, C. T (1988) Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification. Nucleic Acids Res. 16, 11141–11156.

    Article  PubMed  CAS  Google Scholar 

  8. Chamberlain, J. S., Gibbs, R A, Ranier, J. E., and Caskey, C. T. (1989) Multiplex PCR for the diagnosis of Duchenne muscular dystrophy, in PCR Protocols: A Guide to Methods and Applications (Innis, M., Gelfand, D., Sninski, J., and White, T., eds.), Academic, Orlando, FL, pp 272–281

    Google Scholar 

  9. Gibbs, R A., Nguyen, P N, Edwards, A. O., Civitello, A, and Caskey, C. T (1990) Multiplex DNA deletion detection and exon sequencing of the hypoxanthine phosphoribosyltransferase gene in Lesch-Nyhan families. Genomics 7, 235–244.

    Article  PubMed  CAS  Google Scholar 

  10. Chamberlain, J. S., Ranier, J. E., Caskey, C. T., et al. (1991) Results of a multicenter collaboration of the efficiency and effectiveness of multiplex PCR for diagnosis of Duchenne muscular dystrophy. Submitted to N. EngLJ. Med.

    Google Scholar 

  11. Gibbs, R. A., Nguyen, P. N., McBride, L. J., Koepf, S. M., and Caskey, C. T. (1989) Identification of mutations leading to the Lesch-Nyhan syndrome by automated direct DNA sequencing of in vitro amplified cDNA. Proc. Nad. Acad. Sn. USA 86, 1919–1923.

    Article  CAS  Google Scholar 

  12. Chamberlain, J. S., Ranier, J. E., Gibbs, R. A., Farwell, N. F., McBride, L. J., Madden, D., and Caskey, C. T. (1991) The use of PCR for diagnosis of mutations in the mouse and human dystrophin genes Submitted to J. Cell Biochem

    Google Scholar 

  13. Fenwick, R., Chamberlain, J. S., Ranier, J. E., and Caskey, C. T. Unpublished observations.

    Google Scholar 

  14. Grompe, M., Chamberlain, J. S., Gibbs, R. A., and Caskey, C. T Unpublished observations.

    Google Scholar 

  15. Chamberlain, J. S, Gibbs, R. A., Ranier, J. E., and Caskey, C. T. (1989) An integrated approach to Duchenne muscular dystrophy diagnosis via multiplex polymerase chain reaction. Am.J. Hum. Genet. 45, A134.

    Google Scholar 

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© 1991 The Humana Press Inc., Clifton, NJ

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Chamberlain, J.S., Gibbs, R.A., Ranier, J.E., Caskey, C.T. (1991). Detection of Gene Deletions Using Multiplex Polymerase Chain Reactions. In: Mathew, C.G. (eds) Protocols in Human Molecular Genetics. Methods in Molecular Biology, vol 9. Springer, Totowa, NJ. https://doi.org/10.1385/0-89603-205-1:299

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  • DOI: https://doi.org/10.1385/0-89603-205-1:299

  • Publisher Name: Springer, Totowa, NJ

  • Print ISBN: 978-0-89603-205-7

  • Online ISBN: 978-1-59259-496-2

  • eBook Packages: Springer Protocols

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