Statistical Tools and R Software for Cancer Driver Probabilities

  • Giovanni Parmigiani
  • Simina Boca
  • Jie Ding
  • Lorenzo Trippa
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1101)

Abstract

This chapter provides a description and illustration of CancerMutationAnalysis and Cancer MutationMCMC, two open source R packages specifically designed for the analysis of somatic mutations in cancer genome studies, at both the gene and gene-set levels.

Key words

Markov Chain Monte Carlo Gene mutation Cancer driver gene 

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Copyright information

© Springer Science+Business Media, LLC 2014

Authors and Affiliations

  • Giovanni Parmigiani
    • 1
  • Simina Boca
    • 2
  • Jie Ding
    • 1
  • Lorenzo Trippa
    • 1
  1. 1.Department of Biostatistics and Computational BiologyDana Farber Cancer InstituteBostonUSA
  2. 2.Biostatistics Branch, Division of Cancer Epidemiology and GeneticsNational Cancer InstituteBethesdaUSA

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