Skip to main content

In Vitro Assays of Orphan Glycosyltransferases and Their Application to Identify Notch Xylosyltransferases

  • Protocol
  • First Online:
Book cover Glycosyltransferases

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1022))

Abstract

Here we describe a systematic approach to determine the activity of putative glycosyltransferases with a focus on orphan members of the glycosyltransferase 8 family. An assay that measures the hydrolysis activity of glycoslytransferases can indicate the donor nucleotide sugar specificity without previous knowledge about the acceptor. Knowing the donor specificity, the acceptor specificity can subsequently be determined using synthetic acceptors. Three putative glycosyltransferases, now renamed GXYLT1, GXYLT2, and XXYLT1, have been identified this way as xylosyltransferases and in addition have been shown to act on O-glucosylated EGF repeats of Notch.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Beyer TA, Sadler JE, Rearick JI, Paulson JC, Hill RL (1981) Glycosyltransferases and their use in assessing oligosaccharide structure and structure-function relationships. Adv Enzymol Relat Areas Mol Biol 52:23–175

    PubMed  CAS  Google Scholar 

  2. Henrissat B, Surolia A, Stanley P (2009) A genomic view of glycobiology (chapter 7). In: Varki A, Cummings RD, Esko JD, Freeze HH, Stanley P, Bertozzi CR, Hart GW, Etzler ME (eds) Essentials of glycobiology, 2nd edn. Cold Spring Harbor, NY

    Google Scholar 

  3. Sethi MK, Buettner FF, Krylov VB, Takeuchi H, Nifantiev NE, Haltiwanger RS, Gerardy-­Schahn R, Bakker H (2010) Identification of glycosyltransferase 8 family members as xylosyltransferases acting on O-glucosylated notch epidermal growth factor repeats. J Biol Chem 285:1582–1586

    Article  PubMed  CAS  Google Scholar 

  4. Sethi MK, Buettner FF, Ashikov A, Krylov VB, Takeuchi H, Nifantiev NE, Haltiwanger RS, Gerardy-Schahn R, Bakker H (2012) Molecular cloning of a xylosyltransferase that transfers the second xylose to O-glucosylated epidermal growth factor repeats of notch. J Biol Chem 287:2739–2748

    Article  PubMed  CAS  Google Scholar 

  5. Larsen RD, Rajan VP, Ruff MM, Kukowska-­Latallo J, Cummings RD, Lowe JB (1989) Isolation of a cDNA encoding a murine UDPgalactose: β-D-galactosyl- 1,4-N-acetyl-­D-glucosaminide α-1,3-galactosyltransferase: expression cloning by gene transfer. Proc Natl Acad Sci USA 86:8227–8231

    Article  PubMed  CAS  Google Scholar 

  6. Shinkai A, Shinoda K, Sasaki K, Morishita Y, Nishi T, Matsuda Y, Takahashi I, Anazawa H (1997) High-level expression and purification of a recombinant human α-1, 3-­fucosyl-transferase in baculovirus-infected insect cells. Protein Expr Purif 10:379–385

    Article  PubMed  CAS  Google Scholar 

  7. Prieels JP, Monnom D, Dolmans M, Beyer TA, Hill RL (1981) Co-purification of the Lewis blood group N-acetylglucosaminide α1 → 4 fucosyltransferase and an N-acetylglucosaminide α1 → 3 fucosyltransferase from human milk. J Biol Chem 256:10456–10463

    PubMed  CAS  Google Scholar 

  8. Palcic MM, Heerze LD, Pierce M, Hindsgaul O (1988) The use of hydrophobic synthetic glycosides as acceptors in glycosyltransferase assays. Glycoconj J 5:49–63

    Article  CAS  Google Scholar 

  9. Shevchenko A, Wilm M, Vorm O, Mann M (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 68:850–858

    Article  PubMed  CAS  Google Scholar 

  10. Johswich A, Kraft B, Wuhrer M, Berger M, Deelder AM, Hokke CH, Gerardy-Schahn R, Bakker H (2009) Golgi targeting of Drosophila melanogaster β4GalNAcTB requires a DHHC protein family-related protein as a pilot. J Cell Biol 184:173–183

    Article  PubMed  CAS  Google Scholar 

  11. Kraft B, Johswich A, Kauczor G, Scharenberg M, Gerardy-Schahn R, Bakker H (2011) “Add-on” domains of Drosophila β1,4-N-­acetylgalactosaminyltransferase B in the stem region and its pilot protein. Cell Mol Life Sci 68:4091–4100

    Article  PubMed  CAS  Google Scholar 

  12. Schwientek T, Keck B, Levery SB, Jensen MA, Pedersen JW, Wandall HH, Stroud M, Cohen SM, Amado M, Clausen H (2002) The Drosophila gene brainiac encodes a glycosyltransferase putatively involved in glycosphingolipid synthesis. J Biol Chem 277:32421–32429

    Article  PubMed  CAS  Google Scholar 

  13. Palcic MM (1994) Glycosyltransferases in glycobiology. Methods Enzymol 230:300–316

    Article  PubMed  CAS  Google Scholar 

  14. Haines N, Irvine KD (2005) Functional analysis of Drosophila β1,4-N-acetylgalactosa­minyltransferases. Glycobiology 15:335–346

    Article  PubMed  CAS  Google Scholar 

  15. Moller S, Croning MD, Apweiler R (2001) Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17:646–653

    Article  PubMed  CAS  Google Scholar 

  16. Senn HJ, Wagner M, Decker K (1983) Ganglioside biosynthesis in rat liver. Characterization of UDPgalactose-­glucosylceramide galactosyltransferase and UDPgalactose-GM2 galactosyltransferase. Eur J Biochem 135:231–236

    Article  PubMed  CAS  Google Scholar 

  17. Krylov V, Ustyuzhanina N, Grachev A, Bakker H, Nifantiev N (2007) Stereoselective synthesis of the 3-aminopropyl glycosides of α-D-­Xyl-(1 → 3)β-D-Glc and α-D-Xyl-(1 → 3)-α-D-Xyl-(1 → 3)-β-D-Glc and of their corresponding N-octanoyl derivatives. Synthesis 2007:3147–3154

    Article  Google Scholar 

Download references

Acknowledgments

This work is supported by funding from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) for the Cluster of Excellence REBIRTH (From Regenerative Biology to Reconstructive Therapy). The authors thank Françoise Routier for critical reading of the manuscript.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media New York

About this protocol

Cite this protocol

Sethi, M.K., Buettner, F.F.R., Ashikov, A., Bakker, H. (2013). In Vitro Assays of Orphan Glycosyltransferases and Their Application to Identify Notch Xylosyltransferases. In: Brockhausen, I. (eds) Glycosyltransferases. Methods in Molecular Biology, vol 1022. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-465-4_23

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-465-4_23

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-464-7

  • Online ISBN: 978-1-62703-465-4

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics