Skip to main content

Labeling Meiotic Chromosomes in Maize with Fluorescence In Situ Hybridization

  • Protocol
  • First Online:
Plant Meiosis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 990))

  • 2442 Accesses

Abstract

Fluorescence in situ hybridization (FISH) can be used to visualize chromosomal features using repetitive or single gene probes above a minimum target size. When applied to meiosis, each chromosome of the karyotypic complement can be identified, which can facilitate an understanding of the interrelationship of different chromosomes during this process. On the other hand, the pachytene stage of early meiosis is characterized by slightly but not strongly condensed chromosomes that permit more detailed analyses of adjacent features than can be achieved with somatic metaphase chromosomes.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Kato A, Lamb JC, Birchler JA (2004) Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proc Nat Acad Sci USA 101:13554–13559

    Article  PubMed  CAS  Google Scholar 

  2. Lamb JC, Danilova T, Bauer MJ, Meyer J, Holland JJ, Jensen MD et al (2007) Single gene detection and karyotyping using small target FISH on maize somatic chromosomes. Genetics 175:1047–1058

    Article  PubMed  CAS  Google Scholar 

  3. Kato A, Albert PS, Vega JM, Birchler JA (2006) Sensitive FISH signal detection using directly labeled probes produced by high concentration DNA polymerase nick translation in maize. Biotech Histochem 81:71–78

    Article  PubMed  Google Scholar 

  4. Danilova TV, Birchler JA (2008) Integrated cytogenetic map of mitotic metaphase chromosome 9 of maize: resolution, sensitivity and banding paint development. Chromosoma 117:345–356

    Article  PubMed  Google Scholar 

  5. Wolfgruber TK, Sharma A, Schneider KL, Albert PS, Koo D-H, Shi J et al (2009) Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals a major role for retrotransposons. PLoS Genet 5:e1000723

    Article  Google Scholar 

  6. Lamb JC, Meyer JM, Corcoran B, Kato A, Han F, Birchler JA (2007) Distinct chromosomal distributions of highly repetitive sequences in maize. Chromosome Res 15:33–49

    Article  PubMed  CAS  Google Scholar 

  7. Zhang J, Yu C, Pulletikurti V, Lamb J, Danilova T, Weber DF, Birchler J, Peterson T (2009) Alternative Ac/Ds transposition induces major chromosomal rearrangements in maize. Genes Dev 23:755–765

    Article  PubMed  CAS  Google Scholar 

  8. Yu C, Danilova TV, Zhang J, Birchler JA, Peterson T (2010) Constructing defined chromosome segmental duplications in maize. Cytogenet Genome Res 129:72–81

    Article  PubMed  CAS  Google Scholar 

  9. Szinay D, Chang S-B, Khrustaleva L, Peters S, Schijlen E, Bai Y et al (2008) High-resolution chromosome mapping of BACs using multi-colour FISH and pooled-BAC FISH as a backbone for sequencing tomato chromosome. Plant J 56:627–637

    Article  PubMed  CAS  Google Scholar 

  10. Kato A, Lamb JC, Albert PS, Danilova T, Han F, Gao Z et al (2011) Chromosome painting for plant biotechnology. In: Birchler JA (ed) Plant chromosome engineering. Humana, New York, pp 67–96

    Chapter  Google Scholar 

  11. Chang MT, Neuffer MG (1994) Chromosomal behavior during microsporogenesis. In: Freeling M, Walbot V (eds) The maize handbook. Springer, New York, pp 460–475

    Google Scholar 

  12. Li X, Topp CN, Dawe RK (2012) Maize antibody procedures: Immunolocalization and chromatin immunoprecipitation. In: Bass HW, Birchler JA (eds) Plant cytogenetics: genome structure and function. Springer, New York, pp 273–274

    Google Scholar 

Download references

Acknowledgments

This work was supported by grants from the National Science Foundation DBI 0423898, DBI 0421671, and DBI 0701297.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media New York

About this protocol

Cite this protocol

Gao, Z., Han, F., Danilova, T.V., Lamb, J.C., Albert, P.S., Birchler, J.A. (2013). Labeling Meiotic Chromosomes in Maize with Fluorescence In Situ Hybridization. In: Pawlowski, W., Grelon, M., Armstrong, S. (eds) Plant Meiosis. Methods in Molecular Biology, vol 990. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-333-6_4

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-333-6_4

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-332-9

  • Online ISBN: 978-1-62703-333-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics