Abstract
Methylated CpG island amplification and microarray (MCAM) is a two-color array technique that quantifies DNA methylation by hybridizing equimolar amounts of treated vs. control cell-line DNA to an array platform. Sample preparation, hybridization, and scanning are performed over 1 week, but multiple samples can be prepared simultaneously, allowing for high-throughput processing and data acquisition. One microarray slide is required for each sample assayed, with a control sample hybridized with each test sample.
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Estecio, M. R., Yan, P. S., Ibrahim, A. E., Tellez, C. S., Shen, L., Huang, T. H., and Issa, J. P. (2007) High-throughput methylation profiling by MCA coupled to CpG island microarray, Genome Res 17, 1529–1536.
Toyota, M., Ho, C., Ahuja, N., Jair, K. W., Li, Q., Ohe-Toyota, M., Baylin, S. B., and Issa, J. P. (1999) Identification of differentially methylated sequences in colorectal cancer by methylated CpG island amplification, Cancer Res 59, 2307–2312.
Estécio, M. R. H., Yan, P. S., Huang, T. H-M., Issa, J-P. J. (2008) Methylated CpG Island Amplification and Microarray (MCAM) for high-throughput analysis of DNA methylation, in Cold Spring Harb. Protoc., Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
Hatada, I., Fukasawa, M., Kimura, M., Morita, S., Yamada, K., Yoshikawa, T., Yamanaka, S., Endo, C., Sakurada, A., Sato, M., Kondo, T., Horii, A., Ushijima, T., and Sasaki, H. (2006) Genome-wide profiling of promoter methylation in human, Oncogene 25, 3059–3064.
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Colyer, H.A.A., Dellett, M., Mills, K.I. (2012). Detecting DNA Methylation Using the Methylated CpG Island Amplification and Microarray Technique. In: Dumitrescu, R., Verma, M. (eds) Cancer Epigenetics. Methods in Molecular Biology, vol 863. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-612-8_21
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DOI: https://doi.org/10.1007/978-1-61779-612-8_21
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Publisher Name: Humana Press, Totowa, NJ
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