Abstract
Bacterial transformation is an essential component of many molecular biological techniques, but bacterial restriction-modification (R-M) systems can preclude the efficient introduction of shuttle vector plasmids into target bacterial cells. Whole-genome DNA sequences have recently been published for a variety of bacteria. Using homology and motif analyses, putative R-M genes can be identified from genome sequences. Introducing DNA methyltransferase genes into Escherichia coli cells causes subsequently transformed plasmids to be modified by these enzymes. We propose a new method, designated Plasmid Artificial Modification (PAM). A PAM plasmid encoding the modification enzymes expressed by the target bacterial host is transformed into E. coli (PAM host). Propagation of a shuttle vector from the PAM host to the target bacterium ensures that the plasmid will be modified such that it is protected from restriction endonuclease digestion in the target bacterium. The result will be a higher transformation efficiency. Here, we describe the use of PAM and electroporation to transform Bifidobacterium adolescentis ATCC15703. By introducing two genes encoding modification enzymes, we improved transformation efficiency 105-fold.
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References
Roberts R.J., Vincze T., Posfai J., Macelis D. (2010) REBASE – a database for DNA restriction and modification: enzymes, genes and genomes. Nucl. Acids Res, 38, D234–D236.
Schweizer H.P. (2008) Bacterial genetics: past achievements, present state of the field, and future challenges. BioTechniques, 44, 633–641.
William J., Dower W.J., Miller J.F., Ragsdale C.W. (1988) High efficiency transformation of E. coli by high voltage electroporation. Nucl. Acids Res, 16, 6127–6145.
Calvin N.M., Hanawalt P.C. (1988) High-efficiency transformation of bacterial cells by electroporation. J. Bacteriol, 170, 2796–280.
Miller J.F. (1994) Bacterial transformation by electroporation In Bacterial pathogenesis. Part A. Identification and regulation of virulence factors. Methods in Enzymology, 235, 375–385.
Arber W., Linn S. (1969) DNA modification and restriction. Annu. Rev. Biochem, 38, 467–500.
Tock M.R., Dryden D.T. (2005) The biology of restriction and anti-restriction. Curr. Opin. Microbiol, 8, 466–472.
Roberts R.J. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucl. Acids Res. 31, 1805–1812.
Yasui K., Kano Y., Tanaka K., Watanabe K., Shimizu-Kadota M., Yoshikawa H., Suzuki T. (2009) Improvement of bacterial transformation efficiency using plasmid artificial modification. Nucl. Acids Res. 37, e3. doi: 10.1093/nar/gkn884
Elhai J., Vepritskiy A., Muro-Pastor A.M., Flores E., Wolk C.P. (1997) Reduction of conjugal transfer efficiency by three restriction activities of Anabaena sp. strain PCC 7120. J. Bacteriol, 179, 1998–2005.
Biswas I., Gruss A., Ehrlich S.D., Maguin E. (1993) High-efficiency gene inactivation and replacement system for gram-positive bacteria. J. Bacteriol, 175, 3628–3635.
Hashimoto-Gotoh T., Sekiquchi M. (1977). Mutations of temperature sensitivity in R plasmid pSC101. J. Bacteriol, 131, 405–412.
Sugawara H., Ohyama A., Mori H., Kurokawa K. (2009) Microbial Genome Annotation Pipeline (MiGAP) for diverse users. The 20th International Conference on Genome Informatics (GIW2009) Poster and Software Demonstrations (Yokohama), S001-1–2.
Matsumura H., Takeuchi A., Kano Y. (1997) Construction of Escherichia coli-Bifidobacterium longum shuttle vector transforming B. longum 105-A and 108-A. Biosci. Biotechnol. Biochem, 61, 1211–1212.
Tanaka K., Samura K., Kano Y. (2005) Structural and functional analysis of pTB6 from Bifidobacterium longum. Biosci. BioteÂchnol. Biochem, 69, 422–425.
Guzman L.M., Belin D., Carson M.J., Beckwith J. (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J. Bacteriol, 177, 4121–4130.
Mizuguchi H., Nakatsuji M., Fujiwara S., Takagi M., Imanaka T. (1999) Characterization and application to hot start PCR of neutralizing monoclonal antibodies against KOD DNA polymerase. J. Biochem, 126, 762–768.
Novick R.P. (1987) Plasmid incompatibility. Microbiol. Rev, 51, 381–395.
Zhu B., Cai G., Hall E.O., Freeman G.J. (2007) In-fusion assembly: seamless engineering of multidomain fusion proteins, modular vectors, and mutations. Biotechniques, 43, 354–359.
Rozen S., Skaletsky H.J. (2000) Primer3 on the WWW for general users and for biologist programmers. Humana Press, Totowa, NJ.
Inoue H., Nojima H., Okayama H. (1990) High efficiency transformation of Escherichia coli with plasmids. Gene, 96, 23–28.
Richter H.E., Loewen P.C. (1981) Induction of catalase in Escherichia coli by ascorbic acid involves hydrogen peroxide. Biochem. Biophys. Res. Commun, 100, 1039–1046.
Mercenier A., Chassy B.M. (1988) Strategies for the development of bacterial transformation systems. Biochimie, 70, 503–517.
Acknowledgments
The author would like to thank Professor M. Shimizu-Kadota for useful discussion. This work was partly supported by the Grant-in-Aid for Scientific Research on Priority Areas in Applied Genomics from the Ministry of Education, Culture, Sports, Science, and Technology of Japan.
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Suzuki, T., Yasui, K. (2011). Plasmid Artificial Modification: A Novel Method for Efficient DNA Transfer into Bacteria. In: Williams, J. (eds) Strain Engineering. Methods in Molecular Biology, vol 765. Humana Press. https://doi.org/10.1007/978-1-61779-197-0_18
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DOI: https://doi.org/10.1007/978-1-61779-197-0_18
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