Skip to main content

Analysis of a Transcription Factor Using Transient Assay in Arabidopsis Protoplasts

  • Protocol
  • First Online:
Plant Transcription Factors

Part of the book series: Methods in Molecular Biology ((MIMB,volume 754))

Abstract

Regulation of gene expression by transcription factors is a fundamental mechanism in essentially all aspects of cellular processes. Transient expression assay of a reporter plasmid containing a reporter gene driven by a promoter of interest and an effector plasmid expressing a transcription factor has been a powerful tool for analyzing transcription factors. Here we present a protocol for polyethylene glycol (PEG)-mediated transformation of Arabidopsis protoplasts. It details preparation of protoplasts from Arabidopsis suspension cultured cells or leaves of soil-grown Arabidopsis plants and subsequent PEG-mediated transformation with reporter and effector plasmids. This protocol can be completed within 24 h from protoplast preparation to reporter assay. As an example, analysis of the membrane-bound transcription factor AtbZIP60 and its target BiP3 promoter is shown.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Gallagher, S. R. (1992) GUS Protocols: Using the GUS Gene as a Reporter of Gene Expression. Academic, Boston, MA.

    Google Scholar 

  2. Ow, D. W., DE Wet, J. R., Helinski, D. R., Howell, S. H., Wood, K. V., and Deluca, M. (1986) Transient and stable expression of the firefly luciferase gene in plant cells and transgenic plants. Science 234, 856–859.

    Article  PubMed  CAS  Google Scholar 

  3. Grentzmann, G., Ingram, J. A., Kelly, P. J., Gesteland, R. F., and Atkins, J. F. (1998) A dual-luciferase reporter system for studying recoding signals. RNA 4, 479–486.

    Article  PubMed  CAS  Google Scholar 

  4. Yang, Y., Li, R., and Qi, M. (2000) In vivo analysis of plant promoters and transcription factors by agroinfiltration of tobacco leaves. Plant J. 22, 543–551.

    Article  PubMed  CAS  Google Scholar 

  5. Ueki, S., Lacroix, B., Krichevsky, A., Lazarowitz, S. G., and Citovsky, V. (2009) Functional transient genetic transformation of Arabidopsis leaves by biolistic bombardment. Nat. Protoc. 4, 71–77.

    Article  PubMed  CAS  Google Scholar 

  6. Abel, S. and Theologis, A. (1994) Transient transformation of Arabidopsis leaf protoplasts: a versatile experimental system to study gene expression. Plant J. 5, 421–427.

    Article  PubMed  CAS  Google Scholar 

  7. Yoo, S. D., Cho, Y. H., and Sheen, J. (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2, 1565–1572.

    Article  PubMed  CAS  Google Scholar 

  8. Menges, M. and Murray, J. A. (2002) Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity. Plant J. 30, 203–212.

    Article  PubMed  CAS  Google Scholar 

  9. Iwata, Y. and Koizumi, N. (2005) An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants. Proc. Natl. Acad. Sci. USA 102, 5280–5285.

    Article  PubMed  CAS  Google Scholar 

  10. Iwata, Y., Fedoroff, N. V., and Koizumi, N. (2008) Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response. Plant Cell 20, 3107–3121.

    Article  PubMed  CAS  Google Scholar 

  11. Iwata, Y., Yoneda, M., Yanagawa, Y., and Koizumi, N. (2009) Characteristics of the nuclear form of the Arabidopsis transcription factor AtbZIP60 during the endoplasmic reticulum stress response. Biosci. Biotechnol. Biochem. 73, 865–869.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nozomu Koizumi .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Iwata, Y., Lee, MH., Koizumi, N. (2011). Analysis of a Transcription Factor Using Transient Assay in Arabidopsis Protoplasts. In: Yuan, L., Perry, S. (eds) Plant Transcription Factors. Methods in Molecular Biology, vol 754. Humana Press. https://doi.org/10.1007/978-1-61779-154-3_6

Download citation

  • DOI: https://doi.org/10.1007/978-1-61779-154-3_6

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-153-6

  • Online ISBN: 978-1-61779-154-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics